PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG413400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 492aa MW: 57461 Da PI: 10.2936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG413400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.3e-17	33	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e GF vr + kk+ +++ tk + vCs+eg +++++++ + rt+Cka++++++++d+ w++++++ HnH l+ Pavir.1KG413400.1.p 33 DFYNLYSWEKGFGVRFGRGKKN-DSKYQTKLDIVCSCEGLNKNKRSA---------SIRTDCKAMIRLHRRSDHSWYISRVNDTHNHCLT 112 6***************9998.666699*******9997655.........9****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-14	33	112	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-24	235	327	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MIKALRRART SPGEAIFFPH EGTIFNSREE ERDFYNLYSW EKGFGVRFGR GKKNDSKYQT 60 KLDIVCSCEG LNKNKRSASI RTDCKAMIRL HRRSDHSWYI SRVNDTHNHC LTEAYGENKQ 120 WKSHSYIDPS TKDLIKKLRE NNISLGRICN ILGATDGGSR SRMRKESVRS ICAKKAQENM 180 RDDIGKTLKL LETMKETDPG LEVRFQLDAD GRLKSMLWCT GKNRMDYSSF GDARTFDTTY 240 RTNLYILPFG LFMGINNHFQ SIVLGGLLLT SETTADFEWA FANFISIMGG KAPITMLIDQ 300 CAAMAKVMKS TMKETRHRWC RWHVLKNAKD RLGKVYSKHK RFKHEFNKLV TDETDITKFE 360 RTWDTLVKKY RLSKNKFLKR LFKYREKWAK PYFMGIFCAG MTSTQRSESA NHMLKRFIQR 420 ATPMHLFVAK FNEFQSDRND QESKESFVTN QVPRKLRVGV PIENHADTIY TRAMYEKFYD 480 ELFESGRFAI T*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MIKALRRART SPGEAIFFPH EGTIFNSREE ERDFYNLYSW EKGFGVRFGR GKKNDSKYQT  60
KLDIVCSCEG LNKNKRSASI RTDCKAMIRL HRRSDHSWYI SRVNDTHNHC LTEAYGENKQ  120
WKSHSYIDPS TKDLIKKLRE NNISLGRICN ILGATDGGSR SRMRKESVRS ICAKKAQENM  180
RDDIGKTLKL LETMKETDPG LEVRFQLDAD GRLKSMLWCT GKNRMDYSSF GDARTFDTTY  240
RTNLYILPFG LFMGINNHFQ SIVLGGLLLT SETTADFEWA FANFISIMGG KAPITMLIDQ  300
CAAMAKVMKS TMKETRHRWC RWHVLKNAKD RLGKVYSKHK RFKHEFNKLV TDETDITKFE  360
RTWDTLVKKY RLSKNKFLKR LFKYREKWAK PYFMGIFCAG MTSTQRSESA NHMLKRFIQR  420
ATPMHLFVAK FNEFQSDRND QESKESFVTN QVPRKLRVGV PIENHADTIY TRAMYEKFYD  480
ELFESGRFAI T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG413400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1B6Q0S6	0.0	A0A1B6Q0S6_SORBI; Uncharacterized protein
STRING	Pavir.Ab02590.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG413400.1.p