PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1KG361100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 38640.8 Da PI: 4.6084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.3 | 1.7e-28 | 6 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+P+d+el+ e+L+ k+ + +e+i+++d i++++P++Lp +k++ ++ +fF++ +k+y+ gkrk+r Pavir.1KG361100.1.p 6 LPAGVKFDPSDSELL-EHLEGKIGLGGlkphvlI--DEFIPTIDndegICYSHPENLP-GIKTDGTNAHFFHRLSKAYNCGKRKRRRvis 91 799************.99****988775565432..333444433445**********.7788999*******************96689 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tg++k++ + +g ++g k+++v+yk r k+ +++Wvmh+y+l Pavir.1KG361100.1.p 92 csdntvtDDHVRWHKTGRSKSIND-NGVKKGWKEIMVLYKSsqRGGKPDRAHWVMHQYHL 150 999887434889***********9.999***********7611555666*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-32 | 2 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.221 | 6 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 7 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MQWPGLPAGV KFDPSDSELL EHLEGKIGLG GLKPHVLIDE FIPTIDNDEG ICYSHPENLP 60 GIKTDGTNAH FFHRLSKAYN CGKRKRRRVI SCSDNTVTDD HVRWHKTGRS KSINDNGVKK 120 GWKEIMVLYK SSQRGGKPDR AHWVMHQYHL GEEEDEKDGD LVVSKIFYQM PNKSAGASET 180 ETAYDEPDAS ASVVGPKTPK TNTPQPRHPN NSPCETGQNA SILQDQPLLQ DEEEPTISIV 240 SLEDDAVNPA WCAGAEEQQG VGGASRAQLN PDEPLLCRED PNSLNDEALF PLDYPILSQC 300 RNEILDGNLN TFYGLPDLHN VDLGTPPDLQ IGDLQFGSQE SLGSWLDRI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 82 | 87 | KRKRRR |
2 | 83 | 87 | RKRRR |
3 | 84 | 88 | KRRRV |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1KG361100.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818203.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 4e-71 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 0.0 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Ab02181.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-66 | NAC domain containing protein 85 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1KG361100.1.p |