PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG332000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 886aa    MW: 91798.3 Da    PI: 10.3045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG332000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09209253244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          ++W++eEd  l  +v+++G g+W+ I ++    ++Rt+ q+  rw
  Pavir.1KG332000.1.p 209 KAWSKEEDVDLTAGVQKYGEGNWDYILHKCKfdNTRTPDQLSQRW 253
                          58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-11203258IPR009057Homeodomain-like
PROSITE profilePS512949.246203262IPR017930Myb domain
SuperFamilySSF466895.02E-12206259IPR009057Homeodomain-like
SMARTSM007172.0E-6207259IPR001005SANT/Myb domain
PfamPF002491.1E-6209253IPR001005SANT/Myb domain
CDDcd116606.33E-16211258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MAAPAPAPGA GAGKGKGKRK RALSEDDVYL LLNRYAPGTI LTALQEVAQH AEGRRIDWRA  60
VVRKSATGIT SAREYQMLWR HFAYNHDLDE TVDAADQPLG DDSDLELEIE PVPNPTNEAL  120
SEASALAKAL ISGSSREQAS GQRVNLDASV QNTPNEKTVR VPSEKQVAQN QRITSVTGPV  180
SSSKQASHLG LSPGSLDPNG PPKKKKKPKA WSKEEDVDLT AGVQKYGEGN WDYILHKCKF  240
DNTRTPDQLS QRWALICKRP GGSTKPASTK HATVASSEER KDALKAFSIA VGPIRRSSML  300
RPGAQQLGIQ HKSTVFAPKI PEVRSAAAPA PALPVPAPAP APAPAPAVPV PVPMPLPVKV  360
PVKSQLPQGQ QAPVQRAPPK SANTSNKTRK KQSPQPSPII GPSSIQAAAI AAGGRIAPAL  420
TAANFLKVAQ SAHIRSQVTG SSKPSSSTKA PSVVVEPGTQ LGSTQHLEPL NTSGPKSGPS  480
VLTTHATEQV HGASEVAIVN PAGPSARAHP LETNKALSTT LVPVSCDSEE KEDDSTFCVI  540
TIDDLFPEDA MQLETVDLEA KPEIADQKAK QPETVDAKAK QSEAADPKAN QPETADPKAK  600
QPETADPKAK QPETVDPKAK QLDTLNPKVD MVDPKDKDML EFDQYVASQG GAVNTDHLDK  660
SNTGRSSSQP QGLVGSQKNQ VKLVPNVGKG NPVSAGVPAT VKRTKTSVPH LVNPVPAGSP  720
RGIVGTVNAN APNKTLVRKA TALVPAGVQA PLLKKHATNG KGNQVMQPST GSGVPASSQA  780
RVAVNGASKV NLPSSSGQAS SVVNIGNRAN PPYSGQASAV VNIGSKANSP SSGQASVVVN  840
GANRAANPPS SSKASVALSS PSSGKASAAL SGAANKANPP AAPKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201207PKKKKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.53720.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG332000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812020.10.0nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBLA0A3L6QE200.0A0A3L6QE20_PANMI; Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
STRINGPavir.Aa01714.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-34MYB_related family protein