PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG275900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 621aa MW: 72719.6 Da PI: 8.7838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG275900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.7e-13	89	163	8	90
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 G+ +rk +++ + +++++ C+++gk++ +++ ++ rr++ +tgCk k+ vk+ +gkw+ tk+++eHnH+++ Pavir.1KG275900.1.p 89 LLNGYAIRKGTNYLK------KTYQLECNRSGKPKVIENA-QRIRRRNYILKTGCKMKVIVKLI-NGKWVFTKVDSEHNHNVV 163 556777777777666......56889********9988.99*****************.*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-11	85	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-34	274	367	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MLRIDSYQGN LDEAVEDLVM ITGSEAHTTN NAAQVVHEDN VSDDESIVAK NQEYIFPSPE 60 EVEKSAEPSI GMVFESLTEA QRYLNVHGLL NGYAIRKGTN YLKKTYQLEC NRSGKPKVIE 120 NAQRIRRRNY ILKTGCKMKV IVKLINGKWV FTKVDSEHNH NVVSSPSLTK FFLNHKRMTE 180 DEKAFSKILQ DARIKPMKIM SIFRELKGSF KNVFFNAKNL DNLKQKERIK TRNSDIETIV 240 NYLKKVMDEE NIVRSIFWTD ARGRMDYDLY GDFISFDTTF STNRYNMPFA PIVGINGHGK 300 NVIFGCALIE DQTAETFEWV FKTFVETMSG KKPKIIMTDQ DVAMKKVIAN YMPDVIHRLC 360 IWHIMKNLHK KLYFKDTMCP FIHSTSRSES TNSYFKDYVI PKDTIENFMR QFEIIQEASI 420 AKEDENRFTS LVKEPTYCTH QRIEKHAAKL YNRDIFVKFQ EELFNSSAFS VNEIIKDHKY 480 TIVKNCFYKN AEFWKDKFII EVDRIKQEFK CEWCKLQRDG LVCCHILRLF TQLGINKLPD 540 SCINRRWTKT YREEELEKQK KKCIEDLGCT KAQKAIRYVM VNNKVTAIWS DICNNAAQSK 600 ESLEELERFH EKMLKEKETS *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MLRIDSYQGN LDEAVEDLVM ITGSEAHTTN NAAQVVHEDN VSDDESIVAK NQEYIFPSPE  60
EVEKSAEPSI GMVFESLTEA QRYLNVHGLL NGYAIRKGTN YLKKTYQLEC NRSGKPKVIE  120
NAQRIRRRNY ILKTGCKMKV IVKLINGKWV FTKVDSEHNH NVVSSPSLTK FFLNHKRMTE  180
DEKAFSKILQ DARIKPMKIM SIFRELKGSF KNVFFNAKNL DNLKQKERIK TRNSDIETIV  240
NYLKKVMDEE NIVRSIFWTD ARGRMDYDLY GDFISFDTTF STNRYNMPFA PIVGINGHGK  300
NVIFGCALIE DQTAETFEWV FKTFVETMSG KKPKIIMTDQ DVAMKKVIAN YMPDVIHRLC  360
IWHIMKNLHK KLYFKDTMCP FIHSTSRSES TNSYFKDYVI PKDTIENFMR QFEIIQEASI  420
AKEDENRFTS LVKEPTYCTH QRIEKHAAKL YNRDIFVKFQ EELFNSSAFS VNEIIKDHKY  480
TIVKNCFYKN AEFWKDKFII EVDRIKQEFK CEWCKLQRDG LVCCHILRLF TQLGINKLPD  540
SCINRRWTKT YREEELEKQK KKCIEDLGCT KAQKAIRYVM VNNKVTAIWS DICNNAAQSK  600
ESLEELERFH EKMLKEKETS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG275900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A8Y9M9	0.0	A0A0A8Y9M9_ARUDO; Uncharacterized protein
STRING	Pavir.Ha01487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-49	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1KG275900.1.p