PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG263500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 240aa    MW: 25986 Da    PI: 7.2873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG263500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.3e-063971437
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskK 37
                          +  rE+ RRd++N+ f+eL   l k+   +++K
  Pavir.1KG263500.1.p 39 QKADREKMRRDKLNEQFQELGNTLEKN-ELRDEK 71
                         6778****************9999885.234444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.72E-53066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-43771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDPCGRQPPE DGLIHPRDAD LSQRTECKAQ GPFSTSKVQK ADREKMRRDK LNEQFQELGN  60
TLEKNELRDE KASLKYEVDN LNNQCQQRMR VLYPWAGMEP SVVIGPPPAY PYPVPLAIPS  120
VSPSNQLNSP AAHSSSHRSN SPARDCCRSM SSPLQQASCE LRSIGVGDVA TDLELKTPGS  180
SGPSHSEITT KDSSSDSKTK KQCIKQINCT TLTEGTSSSR CSSSAPPDVS ISVRDAGVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG263500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689464e-54BT068946.1 Zea mays full-length cDNA clone ZM_BFb0018C15 mRNA, complete cds.
GenBankEU9755134e-54EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankHQ8587874e-54HQ858787.1 Zea mays clone UT1801 bHLH transcription factor mRNA, partial cds.
GenBankJQ8870954e-54JQ887095.1 Zea mays isolate 478 clone 1 GRMZM2G114444-like gene, partial sequence.
GenBankJQ8873274e-54JQ887327.1 Zea mays isolate 5003 clone 1 GRMZM2G114444-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815621.11e-111transcription factor bHLH121 isoform X3
TrEMBLA0A2S3GP781e-110A0A2S3GP78_9POAL; Uncharacterized protein
STRINGPavir.Aa02015.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-13bHLH family protein