PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG240700.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 353aa    MW: 39389.1 Da    PI: 9.5799
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG240700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-114069433
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
                          k err+++NReAAr+sR+RKka++++Le+
  Pavir.1KG240700.6.p 40 AKTERRLAQNREAARKSRLRKKAYVQQLET 69
                         799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-537114IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.223982IPR004827Basic-leucine zipper domain
PfamPF001702.2E-84069IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-74169No hitNo description
SuperFamilySSF579593.63E-74183No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
PfamPF141442.2E-28123197IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLIRYLTVQL ALLTVLSDLF AVLVQRKNGS TRKDGKLLDA KTERRLAQNR EAARKSRLRK  60
KAYVQQLETS RIRLQQIERE LQGARSQGLF AGGGGSASGD TSSGAVMFDM EYARWLEDDS  120
KLMTELQGIL QAQNLDANLG AIVEECMRHY DELFHLRAML ARSDVFHLMT GLWVTTAERC  180
FLWMGGFRPS EILKMLIPQL DPLTEQQLLG MCHLQRSSLQ TEEALVQGLQ QLHQSLADAV  240
GASPLSDGAS VANYTALMAL ALDRLDTLES FYRQADNLRQ QTLQHMRRLL TTRQAARCFL  300
SIGEYRRRLR ALSSVWASSR PRESFVAAAG DVSPTATGTA GQAVRPYSNH SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG240700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805154.10.0transcription factor TGAL5-like isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2T7ED590.0A0A2T7ED59_9POAL; Uncharacterized protein
STRINGPavir.J08325.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-113bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]