PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG240700.5.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 410aa MW: 45415.1 Da PI: 8.0249

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG240700.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.4e-11	97	126	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Pavir.1KG240700.5.p 97 AKTERRLAQNREAARKSRLRKKAYVQQLET 126 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-5	94	171	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	96	139	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-8	97	126	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	98	140	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-7	98	126	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-28	180	254	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MSHLQQLYSG NSHSVGSTTD SSSGQKNMPQ AELVSSGSIR ADYEQQHEVL MVTVDDYNYE 60 QGLGAAATTA PIFQQHTAGQ DRRKNGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY 120 VQQLETSRIR LQQIERELQG ARSQGLFAGG GGSASGDTSS GAVMFDMEYA RWLEDDSKLM 180 TELQGILQAQ NLDANLGAIV EECMRHYDEL FHLRAMLARS DVFHLMTGLW VTTAERCFLW 240 MGGFRPSEIL KMLIPQLDPL TEQQLLGMCH LQRSSLQTEE ALVQGLQQLH QSLADAVGAS 300 PLSDGASVAN YTALMALALD RLDTLESFYR QADNLRQQTL QHMRRLLTTR QAARCFLSIG 360 EYRRRLRALS SVWASSRPRE SFVAAAGDVS PTATGTAGQA VRPYSNHSQ*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MSHLQQLYSG NSHSVGSTTD SSSGQKNMPQ AELVSSGSIR ADYEQQHEVL MVTVDDYNYE  60
QGLGAAATTA PIFQQHTAGQ DRRKNGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY  120
VQQLETSRIR LQQIERELQG ARSQGLFAGG GGSASGDTSS GAVMFDMEYA RWLEDDSKLM  180
TELQGILQAQ NLDANLGAIV EECMRHYDEL FHLRAMLARS DVFHLMTGLW VTTAERCFLW  240
MGGFRPSEIL KMLIPQLDPL TEQQLLGMCH LQRSSLQTEE ALVQGLQQLH QSLADAVGAS  300
PLSDGASVAN YTALMALALD RLDTLESFYR QADNLRQQTL QHMRRLLTTR QAARCFLSIG  360
EYRRRLRALS SVWASSRPRE SFVAAAGDVS PTATGTAGQA VRPYSNHSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG240700.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805154.1	0.0	transcription factor TGAL5-like isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A2T7ED59	0.0	A0A2T7ED59_9POAL; Uncharacterized protein
STRING	Pavir.J08325.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-113	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG240700.5.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]