PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG100200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 180aa MW: 20023.8 Da PI: 10.0574

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG100200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.7e-10	1	40	8	47
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r+++N+ +A +sR+RKk +++ Le k+k Leae +L Pavir.1KG100200.1.p 1 MRRMRNKDSAMKSRERKKLYVKDLEMKSKYLEAECCRLSY 40 7********************************9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14704	4.69E-12	1	48	No hit	No description
PROSITE profile	PS50217	8.691	1	38	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-10	1	57	No hit	No description
SuperFamily	SSF57959	1.06E-9	2	56	No hit	No description
PROSITE pattern	PS00036	0	2	16	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.1E-8	2	38	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRRMRNKDSA MKSRERKKLY VKDLEMKSKY LEAECCRLSY ALQCCAAETM ALRHSLLKDR 60 PVGAPTAMQE SAVLTETLPL VSLLWLVSIV CLFLIPGVPN KSLVAPSSLG RDLVKLARTS 120 TNGVKMFQMT TKGDDPRSLE LVCLGRRCRS TRARIRSPLL PWYAVADTAG HCAILLSCY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.29849	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG100200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803229.1	1e-107	bZIP transcription factor 50-like
Swissprot	Q69XV0	5e-66	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2T7F313	1e-106	A0A2T7F313_9POAL; Uncharacterized protein
STRING	Pavir.Ab00677.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-13	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Pavir.1KG100200.1.p

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]