PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG090300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 242aa MW: 25477.6 Da PI: 8.3824 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.2 | 3.1e-07 | 141 | 183 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk ++ e ++ v +L+aeN++L++e+ l+ +++l +e+ Pavir.1KG090300.1.p 141 RPRKKLRLPEVQQLVRSLTAENDSLREEMRALQRACKALSKEN 183 99*************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-4 | 140 | 180 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAAAACADAD ADALAADIIC SLRGADLAGW TPPWCKPAPC EGELIWPPVA RGKRSRRRSP 60 SAGPAAAGKG RWGRGSPASP LDYSGGSGSG GSTSGGDDGG GFCSPGHRLA PATKVGSIGR 120 PQLPFPTPTF PTQPTRATGQ RPRKKLRLPE VQQLVRSLTA ENDSLREEMR ALQRACKALS 180 KENDKLETRL VQSDLPNEIT SKDQKGKEHI DEQVMQSTPD SFVLPDLNLP PQDTADVSPV 240 H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | RPRKKLR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2578 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG090300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794252.1 | 1e-124 | uncharacterized protein LOC112874890 isoform X2 | ||||
TrEMBL | A0A2T7F2T8 | 1e-126 | A0A2T7F2T8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07681.1.p | 1e-174 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG090300.1.p |