PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.1KG079200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 414aa MW: 45972.9 Da PI: 7.7854

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG079200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.4e-08	164	227	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv+a ++ + W I+ t + +Rt+kq+k++w +y Pavir.1KG079200.1.p 164 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 227 789**********************************************************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.411	159	228	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.06E-5	161	230	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-5	163	230	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-6	163	226	IPR009057	Homeodomain-like
Pfam	PF14303	5.4E-6	269	392	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MANWSPNMQS YFDLLNADPE RSTTHTPGTN ASEEEFDYSP LHRRSETAPP SQPRALFPPA 60 PGAFVGAPPP YPYPSYPYPP YPYPPAPATS RVAPPPYPYP APMTDAPPPY PYPPYPYPPY 120 PYPPPPTFTT SAPHGHAGGA ASAGSENEGG GTTAPCRPAI PKKRNEWTPA DEEKLVNAWL 180 MHSVDCVDGN SKSGPTFWGQ ISDTYNATTD PLRHRTAKQL KDHWSMYNAR VSLFNAIYNQ 240 EVSKRQSGAD DDMVMDEAKA RYARRAGHEF KLFHWWEAVR HQPKWSVKHG GGPNIDVSKR 300 SRLGTSGEYS SGSRETDEEV NRPPGRDRSK AAARKGKGKV SSSSHTSTDS AEMGEKLEDL 360 CKITHEYAQA KLWKQWNILS SRSTDGMTDA QKKVHDRALK RLQQQLHLND DDE*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MANWSPNMQS YFDLLNADPE RSTTHTPGTN ASEEEFDYSP LHRRSETAPP SQPRALFPPA  60
PGAFVGAPPP YPYPSYPYPP YPYPPAPATS RVAPPPYPYP APMTDAPPPY PYPPYPYPPY  120
PYPPPPTFTT SAPHGHAGGA ASAGSENEGG GTTAPCRPAI PKKRNEWTPA DEEKLVNAWL  180
MHSVDCVDGN SKSGPTFWGQ ISDTYNATTD PLRHRTAKQL KDHWSMYNAR VSLFNAIYNQ  240
EVSKRQSGAD DDMVMDEAKA RYARRAGHEF KLFHWWEAVR HQPKWSVKHG GGPNIDVSKR  300
SRLGTSGEYS SGSRETDEEV NRPPGRDRSK AAARKGKGKV SSSSHTSTDS AEMGEKLEDL  360
CKITHEYAQA KLWKQWNILS SRSTDGMTDA QKKVHDRALK RLQQQLHLND DDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG079200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J22374.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pavir.1KG079200.1.p