PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG060000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 310aa    MW: 35948.1 Da    PI: 9.2329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.51.4e-1527112290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle.....leHn 86 
                          f+++YAkevGF + k + k        ++r ++C+kegk e +kk+ + ++r++++++tgC+aklk++  k+   ++t+++     l+Hn
  Pavir.1KG060000.1.p  27 FFSKYAKEVGFGINKGNRK-------PYSRILRCNKEGKGEFHKKD-SPRKRNKTSKKTGCTAKLKLQYVKNWFKQITSVVieqahLDHN 108
                          9************999644.......46999***********9999.999****************999987666776666666669*** PP

                 FAR1  87 Hela 90 
                          H++ 
  Pavir.1KG060000.1.p 109 HKFL 112
                          *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1127112IPR004330FAR1 DNA binding domain
PfamPF105514.2E-19233303IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQEDSIDPKL VPRPRMSFRT EDDARLFFSK YAKEVGFGIN KGNRKPYSRI LRCNKEGKGE  60
FHKKDSPRKR NKTSKKTGCT AKLKLQYVKN WFKQITSVVI EQAHLDHNHK FLTPKETQHM  120
SSHKKKEPVL LEYIDELHKR EVPPQCVKNI MREMHGGDEN VPITTCDLKN RRAAFRREEH  180
ANDINKLIEF FEECHAQNSQ FQWDVKLDHQ GVLHSLLWSH ASMQGEYIDF GDVMTFDTTH  240
KTNIYDKPLA VFVGSNHHLQ STIFGCALLG DETIPTFEWV FQAFKKCMGK MKTRCILTDQ  300
DKSNGSCNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG060000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3YLY11e-104K3YLY1_SETIT; Uncharacterized protein
STRINGPavir.J40882.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-37FAR1-related sequence 5