PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG037800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 173aa    MW: 17670 Da    PI: 8.0821
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG037800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-113780447
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                          +r++r+ +NRe+ArrsR RKk  ++ L+  ++ L  eN   + 
  Pavir.1KG037800.1.p 37 QRRAKRMLSNRESARRSRMRKKRHLDDLTAQAAHLRRENAHVAT 80
                         689************************************87664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-153498IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.6683678IPR004827Basic-leucine zipper domain
PfamPF001702.3E-93779IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-113887No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-938110No hitNo description
CDDcd147021.60E-143987No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MASSSGSGSS GSLSAATTAA LAAGAGTEEE LRALMEQRRA KRMLSNRESA RRSRMRKKRH  60
LDDLTAQAAH LRRENAHVAT ALGLTTQGLL AVDAENAVLR TQAAELAARL ASLNDILACM  120
NTNAAAAAGA VAVSLTAAAS AVSASSDPYL AFDGAAALDD LLRSCPEMFP LC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG037800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673561e-158BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds.
GenBankBT0853011e-158BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds.
GenBankBT0853531e-158BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds.
GenBankHQ8587961e-158HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797450.11e-81bZIP transcription factor 11-like
SwissprotC0Z2L56e-34BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2T7F1I73e-80A0A2T7F1I7_9POAL; Uncharacterized protein
TrEMBLA0A2T8KTR23e-80A0A2T8KTR2_9POAL; Uncharacterized protein
STRINGSb04g002700.12e-74(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-27G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]