PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01129.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 623aa    MW: 67443.3 Da    PI: 5.7579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01129.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.41.1e-47131431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv +yLk+k++g+ ++    i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ + 
  Pahal.J01129.1  13 LPVGFRFRPTDEELVRHYLKPKIAGRAHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDRLIR 107
                     79*************************999889***************5346667888************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+  g+l+g+kktLvf++grap+g++t W+mheyr 
  Pahal.J01129.1 108 SRrAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 143
                     9877888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5311164IPR003441NAC domain
PROSITE profilePS5100554.88513164IPR003441NAC domain
PfamPF023652.1E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MPPPPPPPPP ESLPVGFRFR PTDEELVRHY LKPKIAGRAH PDLLLIPDVD LSACEPWELP  60
AKALIRSDDP EWFFFAPLDR KYPGGHRSNR STAAGYWKAT GKDRLIRSRR AGTLIGVKKT  120
LVFHRGRAPR GHRTAWIMHE YRTAEPQLQQ GQNGSFVLYR LFNKHEQEQE ASDASDTPST  180
SSPAYPRPIT PAVKSENLSR LATVETAHLL TTACTNNEPT AAQGGNLLLD VLAQLPDLQT  240
EQTYDGFPTI TSPMRPYTDH PFLGNVGGQD LSAYLDSIIA HHDLEDLLVC PSMAETVEHP  300
TGNVEPNPTP LLIPSSSSSN NKRSTENSWA NVDSERLLLI QGADGTDAAA CCSSATKILQ  360
IDMGDANHDT GAQTNSSSSV SAQASHVYNQ YQLQSAFIPE MEPPNSGALC SGGSFTPYPQ  420
HLFNNMVGPS RSDMADSDAF NGLEARAEPS MPQFTVSNFT DPHQGTAARR IRLVHSIQRA  480
SVTEPVLTSN LEGEDEAASW YSTGSSSTNS NEDYANAGGA LHCQGGGVIP AQVVSSIEVT  540
EELQDFIFDA ECSSPHGGNL KRRLKQECIE SSQGVGQHSV HVPGRRRQEA ARIGSVVRLL  600
CLALVAFLVF VGLAGLVAYM GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-441217019174NAC domain-containing protein 19
3swm_B9e-441217019174NAC domain-containing protein 19
3swm_C9e-441217019174NAC domain-containing protein 19
3swm_D9e-441217019174NAC domain-containing protein 19
3swp_A9e-441217019174NAC domain-containing protein 19
3swp_B9e-441217019174NAC domain-containing protein 19
3swp_C9e-441217019174NAC domain-containing protein 19
3swp_D9e-441217019174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1559565LKRRLKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676351e-176BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds.
GenBankEU9532631e-176EU953263.1 Zea mays clone 1394620 mRNA sequence.
GenBankKJ7269821e-176KJ726982.1 Zea mays clone pUT3683 NAC transcription factor (NAC117) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813332.10.0uncharacterized protein LOC112890695
TrEMBLA0A2S3HN530.0A0A2S3HN53_9POAL; Uncharacterized protein
STRINGSi006105m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-64NAC transcription factor-like 9