PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 280aa MW: 30342.4 Da PI: 7.0555 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.3 | 2e-05 | 5 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ + + ++ fC C+ lC C + H g Pahal.J01115.1 5 ACQSCATHDAIVFCLLCGARLCLPCDAALH-G 35 699***999*****************9999.4 PP | |||||||
2 | CCT | 57.1 | 6.3e-20 | 210 | 253 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+a+lRY eK+++R+F K+i Y+sRKa+A++R+RvKGrF+k++ Pahal.J01115.1 210 RERAKLRYTEKKSNRRFCKQIMYASRKARADTRKRVKGRFAKAS 253 99***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.015 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51152 | 8.967 | 189 | 252 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF06203 | 6.5E-14 | 210 | 252 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.632 | 210 | 252 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MPLSACQSCA THDAIVFCLL CGARLCLPCD AALHGATAAA GLHPRARLCD RCNVAPAALR 60 CDDAGAAVTL CAGCAGRGPP AGALVTQYTG CPAPKDLVRI ISTEVPQQQD ALEVWLAGNL 120 PYHLEDGEDD AQLMEGWDVA EETAKLEKML NDLSSSSLVA SCQLQSSLVQ PWQSNDASFP 180 FCTMPLPENI QPPQKPQQDD NAIVKKRQER ERAKLRYTEK KSNRRFCKQI MYASRKARAD 240 TRKRVKGRFA KASTSHDPHN EITLVHEDPS NTEKGETGS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810511.1 | 0.0 | zinc finger protein CONSTANS-LIKE 12-like | ||||
TrEMBL | A0A2S3HMJ8 | 0.0 | A0A2S3HMJ8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13712.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14109 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 4e-18 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01115.1 |