PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00486.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 161aa    MW: 17485.8 Da    PI: 9.3819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00486.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-053456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  Pahal.J00486.1 34 YPCSFCKREFRSAQALGGHMNVH 56
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-63160No hitNo description
PfamPF139125.1E-73457IPR007087Zinc finger, C2H2
SMARTSM003550.0073456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0943461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MERERNKQPP WSYTSCGFMS TSSSSSFTWP PRSYPCSFCK REFRSAQALG GHMNVHRRDR  60
ARLRHGSPPL PLPLPPPPPA ACRPSRAPAA VMIPNLNYPP SPQQYHRHRT TTSSSMAEVS  120
LELGVGMVRS CSTATTPITP GGGPEEDDGG LDLELRLGVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-132956229superman protein
2l1o_A2e-132956229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804370.11e-113transcriptional regulator SUPERMAN-like
TrEMBLA0A2T7F0K46e-84A0A2T7F0K4_9POAL; Uncharacterized protein
STRINGPavir.Ab00024.1.p3e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-20C2H2 family protein