 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I02465.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LSD |
| Protein Properties |
Length: 136aa MW: 14194.3 Da PI: 8.8289 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I02465.3 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 40.5 | 4.5e-13 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+r A VRC++C+tV
Pahal.I02465.3 6 CGGCRTLLMYTRSADTVRCSCCNTV 30
************************9 PP
|
| 2 | zf-LSD1 | 46.3 | 6.7e-15 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg C+t+L+YP+GA sV+Ca+C+++
Pahal.I02465.3 44 CGRCQTTLMYPYGAHSVKCAICNHI 68
***********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 136 aa
Download sequence Send
to blast |
MAQLICGGCR TLLMYTRSAD TVRCSCCNTV NLVRPVNNIA HVNCGRCQTT LMYPYGAHSV 60
KCAICNHITT TGVNTVAPTP SARPASNGSS YSTSSTSVPK SQPQNVTVVV ENPMTVDDKG 120
KLVSNVVVGV TTGKN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU975049 | 1e-139 | EU975049.1 Zea mays clone 466017 zinc finger protein LSD2 mRNA, complete cds. |
| GenBank | EU976486 | 1e-139 | EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds. |
