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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I02465.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LSD |
Protein Properties |
Length: 176aa MW: 18392.2 Da PI: 8.5494 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I02465.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 38 | 2.7e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+ Crt+L YPrGApsV+Ca+C+ V
Pahal.I02465.1 7 CHACRTVLLYPRGAPSVCCAVCQSV 31
***********************98 PP
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2 | zf-LSD1 | 39.9 | 6.7e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+r A VRC++C+tV
Pahal.I02465.1 46 CGGCRTLLMYTRSADTVRCSCCNTV 70
************************9 PP
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3 | zf-LSD1 | 45.8 | 1e-14 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg C+t+L+YP+GA sV+Ca+C+++
Pahal.I02465.1 84 CGRCQTTLMYPYGAHSVKCAICNHI 108
***********************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MQSQIVCHAC RTVLLYPRGA PSVCCAVCQS VTTVPPPGLE MAQLICGGCR TLLMYTRSAD 60 TVRCSCCNTV NLVRPVNNIA HVNCGRCQTT LMYPYGAHSV KCAICNHITT TGVNTVAPTP 120 SARPASNGSS YSTSSTSVPK SQPQNVTVVV ENPMTVDDKG KLVSNVVVGV TTGKN*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU976486 | 1e-175 | EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds. |