PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 411aa MW: 44014.7 Da PI: 7.0509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.4 | 1.7e-15 | 213 | 259 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P++ kK++Ka+iL A++Y+k+Lq Pahal.I02284.1 213 DHIIAERKRREKINQRFIELSTVIPSL-----KKMDKATILSDATKYVKELQ 259 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.91 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 213 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-13 | 213 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-17 | 213 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-15 | 214 | 263 | No hit | No description |
SMART | SM00353 | 1.3E-15 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.162 | 327 | 403 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MIHLSVTVCK LSFSPELHII YSNYGRERAP LMDLRYTAKL RTGIRMEEDS SLFMQWAMDT 60 LRHERPVAGA ISNDCSEATF PSLQALREAS HAAEMVQELI SAAPANSWSS GDDTTDGSSG 120 GNNSAGAAMD HDAWPPTPNS ARRAPSRSGS GTNLPVSWNF GAAASALPGS DGMLAAAEAA 180 PTRRPPDIVC RSPPTRRAGA KGAGSMSTPY AQDHIIAERK RREKINQRFI ELSTVIPSLK 240 KMDKATILSD ATKYVKELQE KLRGLEADGS SNGRSIVKTV VLVKRPCLHA AAKPDEDGSP 300 LSASSAAPAV RKQLPEIEAR FSDKSVMVRI NCEDGKGVAV KLLTEVEELR LSITHANVMP 360 FPAGTLIITI TAKVEEGFTV TAEEIVGRLN SALLHQHNSS CNSTDDETGN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERKRRE |
2 | 218 | 223 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795849.1 | 0.0 | transcription factor MYC2-like isoform X1 | ||||
TrEMBL | A0A2S3IJF5 | 0.0 | A0A2S3IJF5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01004.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02284.1 |