PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02197.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1519aa    MW: 164825 Da    PI: 4.0859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02197.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.5e-1010381060527
                      --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                      +Crf++ +G C+yG++C+F+H++
  Pahal.I02197.1 1038 NCRFYMSNGSCSYGSSCHFNHPQ 1060
                      7********************97 PP
2zf-CCCH29.41.4e-0910961119427
                      ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                      + C +++r+GtC+yG +C+F+H++
  Pahal.I02197.1 1096 RKCTYYMRNGTCRYGKKCCFNHPE 1119
                      67********************96 PP
3zf-CCCH22.42.2e-0712231248227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                       +++C+f +r+G Ck+ + C++ H++
  Pahal.I02197.1 1223 ERPECPFLQRFGNCKFASACQYYHPE 1248
                      689*********************96 PP
4zf-CCCH39.31.1e-1212941320127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                      +++++C+f+++tG Ck+G+ CkF+H++
  Pahal.I02197.1 1294 PGEPECPFYMKTGSCKFGADCKFHHPK 1320
                      5799*********************96 PP
5zf-CCCH23.69.3e-0813871413127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                      ++++ Cr+++++GtCk+ + C F+H++
  Pahal.I02197.1 1387 PGQPDCRYYMQFGTCKFQSACMFNHPK 1413
                      5789*********************96 PP
6zf-CCCH34.63.2e-1114241446527
                      --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                       C+f+++tGtC++G+ C F+H++
  Pahal.I02197.1 1424 QCPFYMKTGTCQFGSACEFSHPK 1446
                      6********************96 PP
7zf-CCCH23.59.8e-0814861511126
                      --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                      +++++C+++++ G+Ck+  +CkF+H+
  Pahal.I02197.1 1486 PGEPECSHYMKHGYCKFQKSCKFHHP 1511
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-410331060IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.95710331061IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-510371060IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-810381060IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-510391059IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-510921119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.72310921120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-610951120IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-710961119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-510981119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.44112211249IPR000571Zinc finger, CCCH-type
SMARTSM003560.0512221248IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-712931320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93912931321IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1012951320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-512981321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-412991320IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-413861413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.55813861414IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-513881413IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-414191446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.47414191447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-514211448IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-914231446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-414241446IPR000571Zinc finger, CCCH-type
SMARTSM003560.003714851512IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3114851513IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-514871511IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1519 aa     Download sequence    Send to blast
MAGAGDEDEF KDALAAADSP PSSPSLASKP KPAAAAGGGG GLGRRLLSSI PIPASLSAAI  60
GRFSGPKPPP ANVGLGLLLH GDLATPADGY GTPASDAATA ISSPHLPPLA SLQRQHGEDQ  120
VAMLGAGVGE EGLGLVPAEE QGRPTAEDRE QEGVAVDGCS ANRNDFSLRG QEEEGEQCHG  180
DELGVAVDGC MVQDQEELVE QEGAPKDCAA VVEDQSNSTA VEQCASDETR AVKDDNAVEV  240
KEQVTDQEGA VSILFAAEDG IAVGSQEEDD VLVAKHGEDV ISVQDQLEVV EQCTGDQLRT  300
TTDDSAGQDQ DLLEQEEATE YYTVLGAVEQ CNNDGSKEVK DVNIMEEEER AVEQEGALGI  360
LDAAKDLCVL DTAKNGAPVE PQEEDVVVKE QNEDVIFVQG QHKVVEQCTG DLLRTATDDN  420
AAQDQDVVEQ EGATEYYTAV EAVEQCTNDG SKAVKDGNVV EEKEKAVEQE VALGILDAAK  480
DCSTVESQEE DDVVVAEKSG DNISVQNEHK VVEQCTGDQL KATADDNATQ DQGVLEQEVA  540
TECYTALEAV EECANDESRA AKDGNVVEEK ERPLKQEGDV SVLNAAKDNI IVESQEEDVV  600
AAEQCEGDIS VQDQHKVVEQ CTSGLRTTMD DNSAEGQEVV EQEGAVVDRD STTYGIAVED  660
KEKEVKQSAC DESRATNDEN AVEANKKMMD QEDVIDKHGV IKDVSAVELL EENSVVVVEQ  720
GGDAITLPDE GNVVEQCTSD QLRATMDDNA AENQEIGEQG GAIVERVVIT DGISVEDQEK  780
EVEQSAGAES TATKDEDGVE DNEDVVVAEQ GGVEISVGDV GNVVKQCTSD QLRANMEDNA  840
AECQEEVVEQ EGAIFERGAT VSGTTVEDQD KEDEQSAGNE LRVTKDENTV EDAIDKQGAT  900
KDGSGVESQE EDVVLGEQGG DGISVRDEGN VVEQCSSDQQ RTTTDDNSAE DPEMVDQGVA  960
SILGADKVDI AVESREDIVV AEQVEDGVSV QNQDKAVEQC TSGQLRTSTD GFAAEDQEAS  1020
RENIGFSTRY PQRPGKLNCR FYMSNGSCSY GSSCHFNHPQ LKATLEVSNF PSEQRNREVE  1080
FLELNRVGLP IREGARKCTY YMRNGTCRYG KKCCFNHPEQ VLDVQLHMPT GWDDTNLQSS  1140
PHSKKSAEHT TINDISSGSE ILPPNILRML LPPQNEPPCT EEKEMKVNKD PDWPSASDDS  1200
DGCCSADSSD GPLCKQEHVD YPERPECPFL QRFGNCKFAS ACQYYHPEDK FPSRYNPIDK  1260
FPSRYHPKDN FQSRYRSKRD PPLAEELKVY PDRPGEPECP FYMKTGSCKF GADCKFHHPK  1320
DLTQSMQCPG SPKRSVAANE HNPAARIPSI HGPASPERSV AANEHHQAAR ITLQDHMHQQ  1380
QKYPARPGQP DCRYYMQFGT CKFQSACMFN HPKDRLSSGW HPAQCPFYMK TGTCQFGSAC  1440
EFSHPKDQCS STGEAIGDGT DYEHDFVTKS ENVLQQQEKT IYPERPGEPE CSHYMKHGYC  1500
KFQKSCKFHH PTYRLSRT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793429.10.0uncharacterized protein LOC112874363 isoform X1
TrEMBLA0A2S3IJ820.0A0A2S3IJ82_9POAL; Uncharacterized protein
STRINGPavir.Ib04286.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-34zinc finger nuclease 3