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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I01546.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 320aa MW: 35335.2 Da PI: 8.3118 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I01546.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
Pahal.I01546.1 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++
Pahal.I01546.1 69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
569******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QSRKDQRQLQ QQQQQQLLRQ ATASDGMKQE AATGDVNGSS GLPAVTYNWH QQAIVGPVPG 180 MMMEGHRIGD EVDESIQKLL YKLGGASPFA TLQVPQCVPP MYEGSPSLMP PSCTVDTTSL 240 KEGGMQGSSA LPALELDQSF HFNQVKLDSL DCFFGMGTDQ SMRWTEMSPL VCPNNTVASS 300 SQGMQQYCHV DETVNLGMK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK112018 | 1e-136 | AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence. |