PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01404.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 436aa    MW: 49053.5 Da    PI: 6.0591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01404.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-19134180148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
   Pahal.I01404.1 134 KGQWTPEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 180
                      799*****************************.*************97 PP
2Myb_DNA-binding538.1e-17189228445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W++eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
   Pahal.I01404.1 189 WSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 228
                      *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.718129184IPR017930Myb domain
SuperFamilySSF466893.74E-32131227IPR009057Homeodomain-like
SMARTSM007171.7E-15133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-30135187IPR009057Homeodomain-like
PfamPF139211.9E-18137194No hitNo description
CDDcd001671.07E-15137180No hitNo description
PROSITE profilePS5129420.073185235IPR017930Myb domain
SMARTSM007172.0E-16185233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21188233IPR009057Homeodomain-like
CDDcd001675.56E-14189231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDFSCFQPNA GICNYLPFDS YMQQNGHYDF HPVDHPFEAI GDYISGGSMV PPATFNDLGH  60
QYFEEREIKK PIFNHASSIG HRFGPQLPLL TPKTEVSHLI ESGLGSYKAY EMSDRFVPRK  120
KTSSNSVKKP NVVKGQWTPE EDRKLVKLVE QFGLRKWSYI AQMLPGRVGK QCRERWHNHL  180
RPNIKKEIWS EEEDMVLIQA HKEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS  240
RTSSKGPKSG TLLQNYIKGL GIGPSKNVAP PAQPTLPPSS PATPGAKSAK VHEMLEHSPS  300
DILDSQGMLA VHEYNCSETD QSCEELLAPI CCGDFSVVDM CEGLFDTTED ASCFQVFTVG  360
DDVDMSYIFN HLDHAIKVDP EIDMEMMWDD DALVCGEPDG AGSAQMETVH VKEEMDLMEM  420
VAVTQKQKCC EAEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-471322342104C-Myb DNA-Binding Domain
1msf_C9e-471322342104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A2T8I0620.0A0A2T8I062_9POAL; Uncharacterized protein
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-62myb domain protein 98