 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.H02111.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 271aa MW: 29674.1 Da PI: 10.5451 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.H02111.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++
Pahal.H02111.1 20 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65
899*****************************.***********996 PP
|
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++w+ +
Pahal.H02111.1 73 RPFTEEEEERLLNAHRAHGNK-WALIARLFP-GRTDNAVKNHWHVV 116
69*******************.*********.***********976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MASSSTTNTS DGAKSSSCPR GHWRPGEDEK LRQLVEKYGP QNWNSIAEKL EGRSGKSCRL 60 RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARL FPGRTDNAVK NHWHVVMARR 120 SRERSRLLAR ATASSSSSPS SAYHSFGTGL PATSSLCFGF SKLGGGGLFS SPAAAPPTSL 180 FKRFGTATGS KGLLGPSYEA ARYSYSGNKQ PAPPVSITFS SPREALAMDI GHHHGRHEHR 240 QKDYHASDGE EPLKRKDVPF IDFLGVGVSS *
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT065675 | 1e-145 | BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds. |
GenBank | HQ858682 | 1e-145 | HQ858682.1 Zea mays clone UT1138 MYB transcription factor mRNA, partial cds. |