PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H01300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 329aa MW: 36281.1 Da PI: 10.0934 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 386.4 | 4.3e-118 | 1 | 328 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye....pa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 md+ g+re r+++ +++ + ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+al+l Pahal.H01300.1 1 MDNLGHREngRQRPdQFKavhtQWmlPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNALAALEL 95 9999999999***999998876225689*****************************************************************99 PP GAGA_bind 87 vensla...salpvgvq.vlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkk 169 ++++ + +++ ++ l+gtk+i++++qls+ ql+ds+++ +re++++ea+pi++a+ ++ + kk++k++++++p+++ + +k+k Pahal.H01300.1 96 ARTNGFnmnNGNGFHQGpPLNGTKNIHHHDQLSHvqsspLQLADSPYDhAREMHISEAYPITTAPGSIGKGKKPRKNNSQASPLKRPSGvlRKTK 190 888765433444444432589**********999899999********9*************************************999777777 PP GAGA_bind 170 ksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 k + +k+ +++ + +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+yPLPv+++rr+aR++gr Pahal.H01300.1 191 KAACGWKNGGMSGGGADstrasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNRRHARMGGR 285 788889999888765333678889*********************************************************************** PP GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 KmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Pahal.H01300.1 286 KMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 328 ******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.1E-165 | 1 | 328 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.2E-95 | 1 | 328 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDNLGHRENG RQRPDQFKAV HTQWMLPQLK DHHSMNLLAL MNEKDSAIRE RDHALAEKKA 60 AIAERDMAFA QRDAAMAERN AAIVERDNAL AALELARTNG FNMNNGNGFH QGPPLNGTKN 120 IHHHDQLSHV QSSPLQLADS PYDHAREMHI SEAYPITTAP GSIGKGKKPR KNNSQASPLK 180 RPSGVLRKTK KAACGWKNGG MSGGGADSTR ASVMKNEWKD QDLGLNQVPF DESTMPAPAC 240 SCTGELRQCY KWGNGGWQSS CCTMSMSMYP LPVMPNRRHA RMGGRKMSGS AFTKLLSRLA 300 AEGHDLSTPV DLKDHWAKHG TNRYITIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184759 | 0.0 | KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811522.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_025811523.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_025811524.1 | 0.0 | barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A2S3HME4 | 0.0 | A0A2S3HME4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02349.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-100 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H01300.1 |
Publications ? help Back to Top | |||
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