PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01300.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BBR-BPC
Protein Properties Length: 329aa    MW: 36281.1 Da    PI: 10.0934
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind386.44.3e-11813281301
       GAGA_bind   1 mdddgsre..rnkg.yye....pa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                     md+ g+re  r+++ +++    +   ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+al+l
  Pahal.H01300.1   1 MDNLGHREngRQRPdQFKavhtQWmlPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNALAALEL 95 
                     9999999999***999998876225689*****************************************************************99 PP

       GAGA_bind  87 vensla...salpvgvq.vlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkk 169
                     ++++     + +++ ++  l+gtk+i++++qls+      ql+ds+++ +re++++ea+pi++a+ ++ + kk++k++++++p+++ +   +k+k
  Pahal.H01300.1  96 ARTNGFnmnNGNGFHQGpPLNGTKNIHHHDQLSHvqsspLQLADSPYDhAREMHISEAYPITTAPGSIGKGKKPRKNNSQASPLKRPSGvlRKTK 190
                     888765433444444432589**********999899999********9*************************************999777777 PP

       GAGA_bind 170 ksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                     k +  +k+  +++   +      +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+yPLPv+++rr+aR++gr
  Pahal.H01300.1 191 KAACGWKNGGMSGGGADstrasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNRRHARMGGR 285
                     788889999888765333678889*********************************************************************** PP

       GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     KmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
  Pahal.H01300.1 286 KMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 328
                     ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.1E-1651328IPR010409GAGA-binding transcriptional activator
PfamPF062173.2E-951328IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDQFKAV HTQWMLPQLK DHHSMNLLAL MNEKDSAIRE RDHALAEKKA  60
AIAERDMAFA QRDAAMAERN AAIVERDNAL AALELARTNG FNMNNGNGFH QGPPLNGTKN  120
IHHHDQLSHV QSSPLQLADS PYDHAREMHI SEAYPITTAP GSIGKGKKPR KNNSQASPLK  180
RPSGVLRKTK KAACGWKNGG MSGGGADSTR ASVMKNEWKD QDLGLNQVPF DESTMPAPAC  240
SCTGELRQCY KWGNGGWQSS CCTMSMSMYP LPVMPNRRHA RMGGRKMSGS AFTKLLSRLA  300
AEGHDLSTPV DLKDHWAKHG TNRYITIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847590.0KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811522.10.0barley B recombinant-like protein D
RefseqXP_025811523.10.0barley B recombinant-like protein D
RefseqXP_025811524.10.0barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2S3HME40.0A0A2S3HME4_9POAL; Uncharacterized protein
STRINGPavir.Db02349.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-100basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]