PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02768.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 371aa    MW: 39711 Da    PI: 8.9236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02768.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.7e-1876161272
        trihelix   2 WtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+l Li+a+r +++r   +                +++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ +
  Pahal.G02768.1  76 WTLHETLILITAKRLDDDRRAGAGgaahghghgspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRTA 161
                     *************95555554322245566666677777*****************************************999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.65568147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-569149IPR009057Homeodomain-like
PfamPF138371.6E-1175159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSANTVAKAT AAPMSGSSDP SPSSSAAASP LALLRPHPHA HAHAGHLTPP SPASGGPAPP  60
PPSPASAPRD YRKGNWTLHE TLILITAKRL DDDRRAGAGG AAHGHGHGSP TTPRSAEQRW  120
KWVENYCWNH GCLRSQNQCN DKWDNLLRDY KKVRDYESRT AAAATATAAA TGGGGGTGAL  180
PSYWSMERHE RKDRNLPTNL APEVFDALTD VLSRRAARRG APPSPPKPLV AQPRAPPPPP  240
LPLPTAVAPP ATSVSAEELT GSSESGEDED GSEEEEGEEP EPKRRRLNRL SSSVVRSATV  300
LARTLVACEE KRERRHREVL ELEERRLRLE EQRTEVRRQG FAGLISAVNS LSTAINALVS  360
DHRSGDSASR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4553260.0AB455326.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/01-Ar-01.
GenBankAB4553270.0AB455327.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826016.11e-135trihelix transcription factor ASR3-like
TrEMBLA0A2T7D1G81e-143A0A2T7D1G8_9POAL; Uncharacterized protein
STRINGSb06g032410.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-41Trihelix family protein