 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.G01829.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 340aa MW: 36533.4 Da PI: 8.8751 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.G01829.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 34.7 | 4.2e-11 | 29 | 74 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+W +eEd l++ v+ +G+++W++I ++ + Rt+k+c++rw +
Pahal.G01829.1 29 KGPWMAEEDAVLLEHVRAHGPRDWSSIRSKGLLPRTGKSCRLRWVN 74
79*************************8876677**********87 PP
|
| 2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 85 | 125 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w
Pahal.G01829.1 85 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 125
79******************.*********.***********5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MARAPGGGRR RGGGGRRRDA AGGAEAVRKG PWMAEEDAVL LEHVRAHGPR DWSSIRSKGL 60
LPRTGKSCRL RWVNKLRPNL KTGCKFSAEE ERVVLELQAQ FGNKWARIAT YLPGRTDNDV 120
KNFWSTRQKR LARLLRAPLP ARSSKNSSGK APAASSLESR PATVGPCLDR VPFGTNSSVH 180
PCSAATPFMN TQNAARVPYD QSASGLLSFN GALPPFAPAT DSHACSSSNA APFLQKSPFD 240
EPPYPLLDYP GMPECWSMAP GGFVNAGAMD DLAYQELLPM MAQSAPMMFP FFGMECAQGG 300
VKPEPPDAPD FFDDLPADMF DSLDQVPPPL SPPATSSGF*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL663000 | 1e-54 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. |
| GenBank | AL731613 | 1e-54 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. |
| GenBank | AP014960 | 1e-54 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 1e-54 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855218 | 1e-54 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
