PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01739.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 472aa    MW: 50920.7 Da    PI: 5.1297
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01739.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.72.6e-25189254171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Pahal.G01739.1 189 RYDSSLSLLTKKFINLLQGAENGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 254
                     6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012174.3E-11425No hitNo description
PRINTSPR012174.3E-112642No hitNo description
PRINTSPR012174.3E-115471No hitNo description
PRINTSPR012174.3E-1179104No hitNo description
Gene3DG3DSA:1.10.10.105.4E-27186255IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-16189252IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-32189254IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-23191254IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.04E-25266377No hitNo description
CDDcd146603.42E-35266378No hitNo description
PfamPF164211.5E-26270375IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDGGSSSLPL PHPPPQVYLR RPVPPPGPPV TAPPRVHLFR PPVPIPIFSS RPRAAARPPI  60
PPAAAAPAPT PAPPPQVAAA PGPPRPPPAA PTSTDMPPPP PDQPQAGLML PPPAPKAAGE  120
GTPMPNPQPN EQNNGGETAK DKETTSEPVK VIKRVKKLKV SKQSVVTSDG SGAVEGDAGP  180
SLHSINHCRY DSSLSLLTKK FINLLQGAEN GTLDLNKAAE TLEVQKRRIY DITNVLEGVD  240
LIEKGLKNMI RWKGFDMSKP KEIECQISSL KEELESLYDE ESRLDDEIRE AKEKLQALTL  300
DEDKRKSLYL LKEDINKIPH FQGSTLIAIN APHGTCVEVP DPNADLYLYG DLGLQEKHYK  360
IVLRSSMGPI DCYLISDQQE IFNPDQQVAA GKLEPVIATG SSQAVQQMDS DPNQTPEKGQ  420
SNAVCTHTSE PSRKHEIMSG ILRIVPSDAD ADSDYWLASD VDVSMTDAWG T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-21189254773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647370.0BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankKJ7268780.0KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824426.10.0transcription factor E2FB-like isoform X1
TrEMBLA0A2S3I5100.0A0A2S3I510_9POAL; Uncharacterized protein
STRINGGRMZM2G050590_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.25e-84E2F transcription factor 1