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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G01014.2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 279aa MW: 30529 Da PI: 6.84 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G01014.2 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed+llv+ v+q G g+W+++++ g++R++k+c++rw +yl
Pahal.G01014.2 18 KGPWTSQEDKLLVEHVRQRGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65
79********************************************97 PP
|
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
Pahal.G01014.2 71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
8999******************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MEGAPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQRGEGR WNSVSKLTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK 120 PSKNIERARA RFLKQRQEMQ SQQQQLLQLA GQVAKDHENQ EGGGARTGTT ADDEDRGSAV 180 VDDACVAPTV AAAEAAGGHH HDEDLIMHDA MDFMCPMSCA LLLHGAVHQG GGTGSCCGST 240 ASDEYGSGEE DGATWGSLWN LDGVVVDDAA AGACCTPW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109620 | 1e-119 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |