 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G01014.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 280aa MW: 30616.1 Da PI: 6.84 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G01014.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.7 | 9.5e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed+llv+ v+q G g+W+++++ g++R++k+c++rw +yl
Pahal.G01014.1 18 KGPWTSQEDKLLVEHVRQRGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65
79********************************************97 PP
|
2 | Myb_DNA-binding | 52.9 | 8.3e-17 | 71 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++v++++++G+ +W+tIar ++ gRt++++k++w+++
Pahal.G01014.1 71 RGKITPQEESIIVQLHALWGNSRWSTIARSLP-GRTDNEIKNYWRTH 116
8999****************************.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MEGAPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQRGEGR WNSVSKLTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NSRWSTIARS LPGRTDNEIK NYWRTHFKKG 120 KPSKNIERAR ARFLKQRQEM QSQQQQLLQL AGQVAKDHEN QEGGGARTGT TADDEDRGSA 180 VVDDACVAPT VAAAEAAGGH HHDEDLIMHD AMDFMCPMSC ALLLHGAVHQ GGGTGSCCGS 240 TASDEYGSGE EDGATWGSLW NLDGVVVDDA AAGACCTPW*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109620 | 1e-113 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |