PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 445aa MW: 48604 Da PI: 6.3291 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 81.6 | 6.7e-26 | 125 | 190 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL llt+kf++ll+++++gi++ln+ a++L dv ++RRiYDi+NVLe+++liekk kn+i wkg Pahal.G00115.1 125 RYDSSLALLTRKFVNLLKQAQDGILDLNSTADKL---DV--QKRRIYDITNVLEGIGLIEKKLKNRICWKG 190 6899******************************...**..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-27 | 123 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.5E-33 | 125 | 190 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-16 | 125 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.1E-22 | 127 | 190 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 9.41E-34 | 200 | 306 | No hit | No description |
SuperFamily | SSF144074 | 3.66E-29 | 202 | 307 | No hit | No description |
Pfam | PF16421 | 2.7E-29 | 205 | 305 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MPQAMSGAAW PAVAQQIVQS LQRCERLPPA GPPFADALGD YHRFPPPSSS AAAAAPLAGG 60 HGDFEEGIVV GTPLKRKAPY GEAPVSGKSA RTYKSKAKCS KPVPQTPISN AASPGNPPTP 120 AGPCRYDSSL ALLTRKFVNL LKQAQDGILD LNSTADKLDV QKRRIYDITN VLEGIGLIEK 180 KLKNRICWKG LDESGTNLDN DLSVLKSEIE NLNLQEQALD EHISKMHKKL KELTEDESRQ 240 RWLFLTEDDI KGLPCFQNQT LIAIKAPHGS SVEVPNPDVM TGESFRRRYR IIIRSTMGPI 300 ALYLVSNFEM KSEEKLDETA TLASHTHLAK RASSVKGPRT KRAGQSCSKE VVVNAQQIHK 360 TPDLNAPYPS EGVLRKITPS DVDSDADYWL LTDDDVSITD MWRTAPAEMQ WDQIDPNDFL 420 AEEVSTPGPG TLSQQPAAIG ETYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-24 | 120 | 191 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824201.1 | 0.0 | transcription factor E2FA-like isoform X1 | ||||
TrEMBL | A0A2S3I6J9 | 0.0 | A0A2S3I6J9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29330.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-103 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00115.1 |