 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.F02005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 399aa MW: 44181.7 Da PI: 6.5082 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.F02005.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.2 | 8e-18 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
Pahal.F02005.1 56 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 103
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.8 | 9e-17 | 109 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
Pahal.F02005.1 109 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 154
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MLMIYSSSSA SCLLLILLYL SSSPSALSCQ LDFRKITHHT ALMGRSPCCE KIGLKKGPWT 60
PEEDQKLLAY IEEHGHGSWR ALPAKAGLQR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI 120
IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK MGIDPVTHKS ISGTLTSTAD 180
DKSAKAAASL SHMAQWESAR LEAEARLARE SKMRTAAPTP TSLHAQQTNV PASTASPCLD 240
VLHAWQVAKI DLDSPTSTLT FTGSNSGMLP TPRINRLEVS ESNSAMWQRS DELEGEESDW 300
QFFSKHQQVL GLEGKEKEED FIGCEEEWFT GMAGVGAGFT GMLLDGSNEH DASECWGESS 360
NGQTEHSNQA SDEEDKNYWN GVLRMVNSEL PPQSPPLV*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728314 | 0.0 | KJ728314.1 Zea mays clone pUT6594 MYB transcription factor (MYB28) mRNA, partial cds. |
