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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.F01981.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 382aa MW: 42882.2 Da PI: 8.1173 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.F01981.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.4 | 1.2e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+
Pahal.F01981.1 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYSS 109
689***************************.89***************9888999***************************************9 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +glkk+Lvfykgra +g ktdW+mhe+rl
Pahal.F01981.1 110 eGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143
56667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MEARNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS 120
LVFYKGRAAR GMKTDWMMHE FRLPSLNDPS LPKRPVDKTI PLNDSWTICR IFKKTSSMAQ 180
RALSHTWGPP LPGATEAEMF SAFQSVQASE FALESSSCSL QVAAPAPASQ FTSRHGLQGQ 240
QQQQNKVNNP SLDGSSCKLI NFNYSQSLEP QNFPITFPFE VQTSQKTTAA APMFFSTQPD 300
HLSGFVVDSS AEVNGGIGSR SQDPSTRKPG NGFSMNNSDW EAGGRINFPF DLGADSSEDW 360
RCNIPWESFL SPAAVQTELP H*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
