PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 360aa MW: 36947 Da PI: 7.2805 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.4e-18 | 173 | 227 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Pahal.F01753.1 173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 227 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 173 | 263 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +lk Pahal.F01753.1 173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKEIAELR-ALK 263 69*************************************************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 157 | 228 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-18 | 163 | 230 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 169 | 229 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-16 | 171 | 233 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-17 | 173 | 230 | No hit | No description |
Pfam | PF00046 | 9.0E-16 | 173 | 227 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 204 | 227 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.8E-11 | 229 | 263 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.2E-26 | 229 | 272 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MELGLSLGEP DAGRAGPELG LGLGVGAAGR GEDGGRGSGA AGAGARWWAA PVAEPEPAVR 60 LSLVSSLGLQ WPPASSDCGG RSSEAPARGF DVNRAPSSAA ASASASAFAA LEDDEEEDPG 120 VGALSSSSPN DSAGSFPLDL GRGARAEGAA ARAGGERSSS RASDEDEGAS AARKKLRLSK 180 EQSAFLEESF KEHSTLNPKQ KAALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 240 CCEALTEENR RLHKEIAELR ALKSAPPFYM HLPATTLSMC PSCERVASNP TSAASTSAPA 300 SSVPPGTAAS VATANSNSVA AAPARGEPRP SSFAALFAAT RSFPLGSQPR PPAPASNCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 229 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 1e-158 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822443.1 | 0.0 | homeobox-leucine zipper protein HOX27-like | ||||
Swissprot | A2YW03 | 1e-120 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 1e-120 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A2S3I372 | 0.0 | A0A2S3I372_9POAL; Uncharacterized protein | ||||
STRING | Si014954m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-67 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01753.1 |