PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01753.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 360aa    MW: 36947 Da    PI: 7.2805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01753.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-18173227256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Pahal.F01753.1 173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 227
                     788899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41173263192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +lk
  Pahal.F01753.1 173 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKEIAELR-ALK 263
                     69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17157228IPR009057Homeodomain-like
SuperFamilySSF466893.76E-18163230IPR009057Homeodomain-like
PROSITE profilePS5007117.248169229IPR001356Homeobox domain
SMARTSM003898.0E-16171233IPR001356Homeobox domain
CDDcd000861.31E-17173230No hitNo description
PfamPF000469.0E-16173227IPR001356Homeobox domain
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
PfamPF021831.8E-11229263IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.2E-26229272IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELGLSLGEP DAGRAGPELG LGLGVGAAGR GEDGGRGSGA AGAGARWWAA PVAEPEPAVR  60
LSLVSSLGLQ WPPASSDCGG RSSEAPARGF DVNRAPSSAA ASASASAFAA LEDDEEEDPG  120
VGALSSSSPN DSAGSFPLDL GRGARAEGAA ARAGGERSSS RASDEDEGAS AARKKLRLSK  180
EQSAFLEESF KEHSTLNPKQ KAALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  240
CCEALTEENR RLHKEIAELR ALKSAPPFYM HLPATTLSMC PSCERVASNP TSAASTSAPA  300
SSVPPGTAAS VATANSNSVA AAPARGEPRP SSFAALFAAT RSFPLGSQPR PPAPASNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411961e-158AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822443.10.0homeobox-leucine zipper protein HOX27-like
SwissprotA2YW031e-120HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-120HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2S3I3720.0A0A2S3I372_9POAL; Uncharacterized protein
STRINGSi014954m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-67homeobox from Arabidopsis thaliana