PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01464.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 688aa    MW: 76671.6 Da    PI: 5.5488
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01464.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22114214198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    ++++
  Pahal.F01464.1 114 FCKILTPSDTSTHGGFSVLRRHANEClplldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSET 205
                     99****************************96444.45569999******************************************999..4477 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +e +v+v+r
  Pahal.F01464.1 206 GEQRVGVRR 214
                     778999997 PP

2Auxin_resp97.12.5e-32240321183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+s+F v+Y+Pr s+s+++v+++k+++a k+ + vGmRfkm+fe+ed++ +++sGtvv+  dl+p +W++S+W+ Lk
  Pahal.F01464.1 240 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLEASKIGFNVGMRFKMSFEGEDVPVKKFSGTVVDKGDLSP-QWQGSEWKTLK 321
                     789********************************************************************.********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-36106229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-36106243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-17112214No hitNo description
SMARTSM010194.3E-17114216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251114216IPR003340B3 DNA binding domain
PfamPF023622.9E-20114214IPR003340B3 DNA binding domain
PfamPF065075.0E-28240321IPR010525Auxin response factor
PfamPF023093.3E-6576625IPR033389AUX/IAA domain
PROSITE profilePS5174519.753589669IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAQGREPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV  60
PNKILCKVVN VELKAETETD EMFAQITLQP DPDQVNLPTL PDPPETPRPV VHSFCKILTP  120
SDTSTHGGFS VLRRHANECL PLLDMSMPTP TQELITKDLH GSEWRFKHIY RGQPRRHLLT  180
TGWSTFVTSK KLIAGDAFVY LRSETGEQRV GVRRLVQKQS TMPASVISSQ SMHLGVLASA  240
SHAIKTNSIF LVYYRPRLSQ SQYIVSLNKY LEASKIGFNV GMRFKMSFEG EDVPVKKFSG  300
TVVDKGDLSP QWQGSEWKTL KVQWDEATNF NGPDRVSSWE IEPFDASAPT INIPVQPSTK  360
NKRPREIAEG LDIQALEPTQ EFWLSGIPEQ HEKAGIGSSE PNCISGHQVV WTSERAGYSA  420
MSSSVCQSSV VLGNWFKDYN SSSKGGSPSL SEISQKLFQV TSNDARVPPW PGLSAYQAEE  480
PSSKLSCNTT LCSYQTEEVA RNLSNAIEEK KEPCMFRLFG VNLINHTKSK SSATTDKMTM  540
GVGEISTRAA GSFEDSGQLS ALSKVTKDHT QLLNESPREI QSHQSCTGRT RIKVQMHGNA  600
VGRAVDLANL DGYPQLTGEL EEMFEIKDLS SKEKWKVVFT NDDGDTMEVG DVPWLEFCLK  660
VRKIVIHSIE DEGDMDPCPE QDVKTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-145935119362Auxin response factor 1
4ldw_A1e-145935119362Auxin response factor 1
4ldw_B1e-145935119362Auxin response factor 1
4ldx_A1e-145935119362Auxin response factor 1
4ldx_B1e-145935119362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816439.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2S3HZC80.0A0A2S3HZC8_9POAL; Auxin response factor
STRINGPavir.Eb00045.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-179auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]