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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 688aa MW: 76671.6 Da PI: 5.5488 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.6 | 2.1e-22 | 114 | 214 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ltpsd++++g +++ +++a+e+ +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v ++++ Pahal.F01464.1 114 FCKILTPSDTSTHGGFSVLRRHANEClplldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSET 205 99****************************96444.45569999******************************************999..4477 PP E..EEEEE- CS B3 90 felvvkvfr 98 +e +v+v+r Pahal.F01464.1 206 GEQRVGVRR 214 778999997 PP | |||||||
2 | Auxin_resp | 97.1 | 2.5e-32 | 240 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F v+Y+Pr s+s+++v+++k+++a k+ + vGmRfkm+fe+ed++ +++sGtvv+ dl+p +W++S+W+ Lk Pahal.F01464.1 240 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLEASKIGFNVGMRFKMSFEGEDVPVKKFSGTVVDKGDLSP-QWQGSEWKTLK 321 789********************************************************************.********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-36 | 106 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-36 | 106 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.87E-17 | 112 | 214 | No hit | No description |
SMART | SM01019 | 4.3E-17 | 114 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-20 | 114 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.0E-28 | 240 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.3E-6 | 576 | 625 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 19.753 | 589 | 669 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MAQGREPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV 60 PNKILCKVVN VELKAETETD EMFAQITLQP DPDQVNLPTL PDPPETPRPV VHSFCKILTP 120 SDTSTHGGFS VLRRHANECL PLLDMSMPTP TQELITKDLH GSEWRFKHIY RGQPRRHLLT 180 TGWSTFVTSK KLIAGDAFVY LRSETGEQRV GVRRLVQKQS TMPASVISSQ SMHLGVLASA 240 SHAIKTNSIF LVYYRPRLSQ SQYIVSLNKY LEASKIGFNV GMRFKMSFEG EDVPVKKFSG 300 TVVDKGDLSP QWQGSEWKTL KVQWDEATNF NGPDRVSSWE IEPFDASAPT INIPVQPSTK 360 NKRPREIAEG LDIQALEPTQ EFWLSGIPEQ HEKAGIGSSE PNCISGHQVV WTSERAGYSA 420 MSSSVCQSSV VLGNWFKDYN SSSKGGSPSL SEISQKLFQV TSNDARVPPW PGLSAYQAEE 480 PSSKLSCNTT LCSYQTEEVA RNLSNAIEEK KEPCMFRLFG VNLINHTKSK SSATTDKMTM 540 GVGEISTRAA GSFEDSGQLS ALSKVTKDHT QLLNESPREI QSHQSCTGRT RIKVQMHGNA 600 VGRAVDLANL DGYPQLTGEL EEMFEIKDLS SKEKWKVVFT NDDGDTMEVG DVPWLEFCLK 660 VRKIVIHSIE DEGDMDPCPE QDVKTSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-145 | 9 | 351 | 19 | 362 | Auxin response factor 1 |
4ldw_A | 1e-145 | 9 | 351 | 19 | 362 | Auxin response factor 1 |
4ldw_B | 1e-145 | 9 | 351 | 19 | 362 | Auxin response factor 1 |
4ldx_A | 1e-145 | 9 | 351 | 19 | 362 | Auxin response factor 1 |
4ldx_B | 1e-145 | 9 | 351 | 19 | 362 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816439.1 | 0.0 | auxin response factor 1-like | ||||
Swissprot | Q5NB85 | 0.0 | ARFA_ORYSJ; Auxin response factor 1 | ||||
TrEMBL | A0A2S3HZC8 | 0.0 | A0A2S3HZC8_9POAL; Auxin response factor | ||||
STRING | Pavir.Eb00045.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 1e-179 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01464.1 |
Publications ? help Back to Top | |||
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