PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 21457.1 Da PI: 8.9514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.9e-21 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r r++lg+f+t+eeAa+a++aa+++l+g+ Pahal.F01346.1 26 RLRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTPEEAARAYDAAARRLRGP 76 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-14 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-17 | 25 | 85 | No hit | No description |
SMART | SM00380 | 3.8E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.8E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-30 | 28 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPRRSTSPA GSSSSGGSGS GLEQPRLRGV RKRPWGRYAA EIRDPVRKSR VWLGTFDTPE 60 EAARAYDAAA RRLRGPGATT NYPVHAQDLN AAAIPASRAS ASGSAVLSED ASSSTSRESP 120 LAVTVAVAAP PSLDLSLALP AVAGTPSSYQ LFLDPAAMVA VAPALLQFLP PKSEEEQSFS 180 GSASSAVFDA APAVGLGLDL NLALPAGMVM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-23 | 14 | 83 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 7e-80 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821473.1 | 1e-143 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2S3I117 | 1e-142 | A0A2S3I117_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01794.1.p | 3e-70 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 3e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01346.1 |