 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.F00780.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 327aa MW: 35169.6 Da PI: 8.7368 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.F00780.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 18 | 63 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+WT+eEde l++ v+++G++ W++I ++ + Rt+k+c++rw +
Pahal.F00780.1 18 KGPWTAEEDEVLLRHVREHGPREWSSIRSKGLLPRTGKSCRLRWVN 63
79*************************8876677**********87 PP
|
| 2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 74 | 114 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++++eE+ +d+ +qlG++ W++Ia +++ gRt++++k++w
Pahal.F00780.1 74 KFSAEEERVVIDLQAQLGNK-WARIATYLP-GRTDNDVKNFWS 114
79******************.*********.***********5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MKPRGGRGGG GEQPAVRKGP WTAEEDEVLL RHVREHGPRE WSSIRSKGLL PRTGKSCRLR 60
WVNKLRPDLK TGCKFSAEEE RVVIDLQAQL GNKWARIATY LPGRTDNDVK NFWSTRQKRL 120
ARLLRAAVPR RRPGKQSGSV SSSHAYELPT QKDPCLDMIP FQGTTTPAHH TGESSSHEPR 180
AANQHRAANA PSLGAHSLPP PPVPLLTHGG AGAGHGSSSA APTSTALLPF DGDYYARDAV 240
AGVDPLVFVD PAACPEPLAV VPPGTFFGLD DDYVHAGRVL HPDESGVRFD DLPPETFDFF 300
ELPHLPPSPS PTVGSLSGAD KGQKPC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL663000 | 7e-44 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. |
| GenBank | AL731613 | 7e-44 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. |
| GenBank | AP014960 | 7e-44 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 7e-44 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855218 | 7e-44 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
