PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00753.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 1109aa    MW: 121193 Da    PI: 6.8499
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00753.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.6e-40180257178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv+ ++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  Pahal.F00753.1 180 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKALVASQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 257
                     6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.838178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-37179258IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQP LPPHAAAAKK RAHPWPAAVA PARAAAAGDG NWNPKMWDWD  60
SRALTARPSS DALRLGGGGG GAQGQQQQPQ PASAAAKAAE AHRQGNGALN LQLGLRKDAA  120
TPMDASPPAP VASSPSPPAS AATGQEPVVR PSKRVRSGSP GSAGGSGGGG GANGGASYPM  180
CQVDDCRADL TSAKDYHRRH KVCETHSKTT KALVASQMQR FCQQCSRFHP LAEFDEGKRS  240
CRRRLAGHNR RRRKTQPTDV ASQLLLPGNQ ENAANRTQDI VNLITVIARL QGSNAGKAPS  300
IAPIPDKQNL VEIISKINSL NNTTSVAKSL PLEVVDLNAS QEQQEDSVQK TANGIDKQTV  360
PSTMDLLAVL STGLATSTPE TNTSQSQGSS DSSGNNKSKS HSTEPATVVN SHDKSIRAFP  420
AAGFTRSNST HESQPHTYMQ TDQETRPYLS LQLFGGTEED IPPKMDSANK YLSSESSNPL  480
DERSPSSSPP ITHKFFPIHS VDEEDRHPHD YGEDAAMVEV STSRAWCAPP LELFKDSDRP  540
IENGSPPNPG YQSCYASTSC SDHSPSTSNS DGQDRTGRII FKLFGKEPST IPGNLRDEIV  600
NWLKHSPTEM EGYIRPGCLV LSMYLSMPAI AWEELEENLL QRVNALVQNP DLDFWREGRF  660
LVRTDSKLVS YNEGTTRLSK SWRTWNTPEL TFVSPIAVVG GQKTSLILKG RNLTIPGTQI  720
HCTSTGKYIS KEVLCSAYPG TIYDDSGVET FDLPAEPDLI LGRCFIEVEN RFRGNSFPVI  780
VASSSVCQEL RNLEVELEDS QIPDVSSDDQ VHDPRQSKPR DQVLHFLNEL GWLFQRAAAC  840
TSDVSDLDLI QFSTPRFKYL LLFSSERDWF SLTKTLLDIL AKRSLVSDEL SQETMEMLAE  900
VHLLNRAVKR KSSRMVHLLV KFVVICPDDS KVYPFPPNFP GPGGLTPLHL AASIENAEDI  960
VDALTDDPQQ IGLNCWQSVL DDDGQSPETY AKLRNHNSYN ELVAQKLVDR KNSQVTIMVD  1020
KDEIRMDQSG NVGGVRALQM QSCSQCAILE SGVLRKPSRS RGLLARPYIH SMLAIAAVCV  1080
CVCVFMRALL RINSGRSFKW ERLDYGTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-33171254184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820195.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2S3I4640.0A0A2S3I464_9POAL; Uncharacterized protein
STRINGPavir.Fb01917.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14