PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 201aa MW: 22415.6 Da PI: 12.2238 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 108.9 | 3.2e-34 | 72 | 147 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C adl+ a y+rrhkvC++hs +++vlv+ + qrfCqqCsrfh+l efD +krsCrrrLa+h e rr+++ Pahal.F00750.1 72 CQVDHCLADLTGAIAYFRRHKVCQAHSVTTEVLVASRIQRFCQQCSRFHRLAEFDGHKRSCRRRLAGHHEWRRRRN 147 *******************************************************************998666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-27 | 68 | 133 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 27.008 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-30 | 71 | 148 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-26 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MPRTDRAKMG PLTGDAEGGR RDPDGRQPAG SHGALTFSAR FRPRRGRSRL SGRARWSGPG 60 AGSRRGCARR LCQVDHCLAD LTGAIAYFRR HKVCQAHSVT TEVLVASRIQ RFCQQCSRFH 120 RLAEFDGHKR SCRRRLAGHH EWRRRRNRPA DVAPQLMLPG NQENAAGRAQ DVVNLIPVIA 180 RLQGTSTHRA LSILFHSFVI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 70 | 145 | 9 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 145 | RLAGHHEWRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821123.1 | 3e-98 | squamosa promoter-binding-like protein 15 isoform X1 | ||||
Swissprot | A2YX04 | 2e-47 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 2e-47 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A2T7D9H2 | 1e-85 | A0A2T7D9H2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01917.1.p | 5e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 1e-35 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00750.1 |