PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E04286.10

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 442aa MW: 49847.7 Da PI: 8.0767

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04286.10	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.1	1.5e-35	45	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Pahal.E04286.10 45 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdv 134 799**********.99**999677544333..3444433445******.555666799**************75666664 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Pahal.E04286.10 135 hKGETRWHKTGKTRPVMV-NGRKKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 187 433778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-39	39	206	IPR003441	NAC domain
PROSITE profile	PS51005	34.144	45	206	IPR003441	NAC domain
Pfam	PF02365	2.9E-16	46	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPK DWVGLPAGVK FDPTDQELIE 60 HLEAKVKDEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT 120 GTRKRRKIQT ECDVHKGETR WHKTGKTRPV MVNGRKKGCK KILVLYTNFG KHRKPEKTNW 180 VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWSSERGA AAAAMAATTV QEQRRRDSGS 240 GSCSSRDHEV SATSFPAGYT VTTAVEMQQH MKQHSADHFS FAPFRKTFDQ EVGIGGDQVP 300 SNQLGRSEQH HGVQEQQPHR PVLATTAVPA TAFLISRPSN PVSTIVPPAM QHTSVVLDHD 360 QFHVPAILLH HHDKFQNMQQ QHQHQQPQPQ QKLDRRSAGL EELIMGCTSS TSTKGETSIP 420 QSQETEWPYH YWPPDNQDHH G*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPK DWVGLPAGVK FDPTDQELIE  60
HLEAKVKDEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT  120
GTRKRRKIQT ECDVHKGETR WHKTGKTRPV MVNGRKKGCK KILVLYTNFG KHRKPEKTNW  180
VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWSSERGA AAAAMAATTV QEQRRRDSGS  240
GSCSSRDHEV SATSFPAGYT VTTAVEMQQH MKQHSADHFS FAPFRKTFDQ EVGIGGDQVP  300
SNQLGRSEQH HGVQEQQPHR PVLATTAVPA TAFLISRPSN PVSTIVPPAM QHTSVVLDHD  360
QFHVPAILLH HHDKFQNMQQ QHQHQQPQPQ QKLDRRSAGL EELIMGCTSS TSTKGETSIP  420
QSQETEWPYH YWPPDNQDHH G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-12	43	187	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017005	0.0	KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818121.1	0.0	NAC domain-containing protein 75-like isoform X1
Refseq	XP_025818123.1	0.0	NAC domain-containing protein 75-like isoform X1
Swissprot	Q9M0F8	1e-151	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2S3HYL1	0.0	A0A2S3HYL1_9POAL; Uncharacterized protein
STRING	Pavir.Eb00261.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-116	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Pahal.E04286.10

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]