PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04227.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 264aa    MW: 28015.2 Da    PI: 10.1078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04227.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32185243159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Pahal.E04227.1 185 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 243
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33170243IPR003657WRKY domain
SuperFamilySSF1182901.44E-28177244IPR003657WRKY domain
PROSITE profilePS5081129.356180245IPR003657WRKY domain
SMARTSM007749.8E-37185244IPR003657WRKY domain
PfamPF031064.4E-25186242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFPSPGRPVM ALGHGQHTSS TAGAAMAAAA ASSSTPSITF SFQPSPPPTS SLAHHGVLGY  60
SSLLLEHPPT ATTSSSSSHA PSSAIPPPNL HHLHAAHVSP PTRSSSTPPH PWSTCDEGHD  120
QGQGRQRGKG SAAAGEGLAA GHNGAAAALG VGAVRMKKAG GGGKARRKVR EPRFCFKTMS  180
DVDVLDDGYK WRKYGQKVVK NTQHPRSYYR CTQDNCRVKK RVERLAEDPR MVITTYEGRH  240
VHSPSRDEED DAARANAEMS FIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25176242874Probable WRKY transcription factor 4
2lex_A1e-25176242874Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369001e-153BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds.
GenBankEU9636461e-153EU963646.1 Zea mays clone 265112 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.10.0probable WRKY transcription factor 13
TrEMBLA0A2S3HYE10.0A0A2S3HYE1_9POAL; Uncharacterized protein
STRINGGRMZM2G151444_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.16e-47WRKY DNA-binding protein 13