PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 50002.6 Da PI: 7.0947 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.8 | 5.5e-11 | 65 | 91 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +GdrC+++H++ Pahal.E03487.1 65 PGEADCGYYLRTGACGFGDRCRYNHPR 91 57899********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 4.9e-12 | 115 | 140 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tGtCk+G++Ck++H++ Pahal.E03487.1 115 GQPVCEYYLKTGTCKFGSNCKYHHPK 140 7899********************96 PP | |||||||
3 | zf-CCCH | 40.2 | 5.6e-13 | 161 | 185 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Pahal.E03487.1 161 EKECSYYMKTGQCKFGSTCKFHHPE 185 689********************96 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 313 | 339 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Pahal.E03487.1 313 PGQPECQYYMRTGDCKFGATCKYNHPR 339 5789*********************96 PP | |||||||
5 | zf-CCCH | 30.8 | 4.9e-10 | 362 | 385 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ Pahal.E03487.1 362 QPCAYYAQNGYCRYGIACKYDHPM 385 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.92 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-6 | 64 | 91 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-9 | 66 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 70 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.483 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-7 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-10 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-7 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-6 | 118 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 158 | 186 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-6 | 158 | 185 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 160 | 185 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 161 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 164 | 184 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 312 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 312 | 339 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 314 | 339 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 316 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 318 | 339 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 358 | 386 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 358 | 385 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 362 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 362 | 383 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEPPHAEEAA AAGGGGGGGG GGEGGRASPG TGLEGPMLRL GLDGGGEGED GEREAEADAR 60 LPERPGEADC GYYLRTGACG FGDRCRYNHP RDRGGTEFGG GAKNGAASDF PERQGQPVCE 120 YYLKTGTCKF GSNCKYHHPK QDGSVQSVIL NSSGFPLRLG EKECSYYMKT GQCKFGSTCK 180 FHHPEFGGIP VTPGIYPPLQ SASVTSPHTY APLANWQMGR SPVVPGSYIP GSYTPMMLSS 240 GMVPLQGWNP YPASVNPVAS VGAQQTVQAG PLYGIGHHGS SATIAYGSPY MPYSSSTGQS 300 SNNHQEHGFP ERPGQPECQY YMRTGDCKFG ATCKYNHPRD WSAAKSSYVF SPLCLPLRPG 360 AQPCAYYAQN GYCRYGIACK YDHPMGALGY SSSALPLSDM PIAPYPLGFS VATLAPSSSS 420 PEYISTKDQS INQVASPVAA PESVGAVLPK GVFPPDTIMR TQTSTTGVSS SSPGGGR* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968830 | 0.0 | EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815660.1 | 0.0 | uncharacterized protein LOC112892755 | ||||
Swissprot | Q5NAW2 | 0.0 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A2S3HWN4 | 0.0 | A0A2S3HWN4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00916.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-122 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03487.1 |
Publications ? help Back to Top | |||
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