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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.E01979.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 299aa MW: 32563.1 Da PI: 6.3698 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.E01979.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl
Pahal.E01979.1 20 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 67
678*******************************************97 PP
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2 | Myb_DNA-binding | 48 | 2.9e-15 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++
Pahal.E01979.1 73 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117
899*******************.*********.***********975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGRHAHAGSA AAGVQLKLRK GLWSPEEDEK LYNHIIRYGV GCWSSVPKLA GLQRCGKSCR 60 LRWINYLRPD LKRGSFSQQE EDAIVGLHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK 120 KLRQRGIDPT THKPISANAA AALDQPASQE HKPPPAADSG GFEPKQQQQQ QQQVFDPFPL 180 TDSFGGGFEA AGAALYGHLG GGKQDAAGFV DYSSVLDVSE NLGYGESSSN SSNWNCAPEA 240 GNALDGGEAP LHWASSEEQS LEHKFLLPCH GQQEQSLPHF DFDIGRGAVV GEFNLEFF*
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Functional Description ? help
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Source |
Description |
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU961618 | 0.0 | EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds. |