PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01823.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 435aa    MW: 48213.9 Da    PI: 10.1951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01823.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-2019118198
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ffkvl   +   ++rl +p +f++++           +ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +f+vF++dg
  Pahal.E01823.1  19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrrkaRAVKEASMAATLEGPSGRTWLVVI--RRSVEGTFFTSGWPKFVQDQALRELEFLVFRYDG 108
                     66777...4455668********888********988999*******************..*********************************9 PP

                     SSEE..EEEEE- CS
              B3  87 rsefelvvkvfr 98 
                     +++f  + +vf+
  Pahal.E01823.1 109 DTRF--TAMVFD 118
                     9888..666665 PP
2B352.21.1e-16317403598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v+vfr
  Pahal.E01823.1 317 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RVHVFR 403
                     6788999999*********9995..345679***************4.444455..9***********************997777..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2014122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-1915122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8316120IPR003340B3 DNA binding domain
CDDcd100178.05E-1817118No hitNo description
PfamPF023624.8E-1819116IPR003340B3 DNA binding domain
SMARTSM010192.7E-1119120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21306403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23307403IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-24311403No hitNo description
SMARTSM010194.1E-11313405IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944313405IPR003340B3 DNA binding domain
PfamPF023622.3E-15315403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MPAAGRRSPW ATGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRRKA RAVKEASMAA  60
TLEGPSGRTW LVVIRRSVEG TFFTSGWPKF VQDQALRELE FLVFRYDGDT RFTAMVFDTS  120
ACEREDLLLG GGGGGDPRRG RQGNKRGRET TGGPSRDAKP KRARKGSVGK ELVPYRAATA  180
GDRQLQVACS NWTPESGAGA VKTEIEDADE LALCVVIPAP PLPPSPQDDD PAPARRRGPH  240
QPQDHGAEPR RAVKTRSIHE DLQASAALAA DADIPASVRR YKGYVSRRRP VTGAERQLAM  300
ELAYAFRSAL PYCVIRMSTM HVYYSFMMRF PTGFSRQHLP RERTDVVLRD PGGKAWVVLY  360
IPNTRDRLSR GWCAFARGNC LEEGDYCVFE LVGAAEFRVH VFRVVDPPVP AVRLRTAASD  420
PSTADLDLTS ASHV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-95HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814249.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A2S3HS660.0A0A2S3HS66_9POAL; Uncharacterized protein
STRINGPavir.Eb02930.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1