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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.E00998.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 566aa MW: 61131.5 Da PI: 8.6994 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E00998.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l
Pahal.E00998.1 65 KGGWTPEEDETLRKAVETFKGRNWKKIAEFFH-DRTEVQCLHRWQKVL 111
688*****************************.************986 PP
|
| 2 | Myb_DNA-binding | 61.3 | 2e-19 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++++d+v+++G+ W+ Ia+ ++ gR +kqc++rw+++l
Pahal.E00998.1 117 KGPWTQEEDDKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 163
79******************************.*************97 PP
|
| 3 | Myb_DNA-binding | 57.7 | 2.6e-18 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+++WT+eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
Pahal.E00998.1 169 KDAWTPEEERALINAHRVYGNK-WAEIAKALP-GRTDNSIKNHWNS 212
679*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 566 aa
Download sequence Send
to blast |
MGAMAEVVQE GCVENRQPLA ASSSSVSDGS SCGGGGQAGA SPPVSSSGNS ISGLRRTSGP 60
IRRAKGGWTP EEDETLRKAV ETFKGRNWKK IAEFFHDRTE VQCLHRWQKV LNPELIKGPW 120
TQEEDDKIID LVRKYGPTKW SIIAKSLPGR IGKQCRERWH NHLNPEIRKD AWTPEEERAL 180
INAHRVYGNK WAEIAKALPG RTDNSIKNHW NSSLRKKLDV YGANSVLAAP NLLAHDDFKD 240
QMRPVAIGSH LDLNKMPNIG SKDVPGRAHR SIMGPLLQAY NLKSVEDSSG GLLSLSIPTV 300
QASYSSLVDG SAVTLAVQGL ESDSVRDKGL EINSIHEKHE KGTEVSSIPD PVGEGCTIQS 360
ESAPAKSGTK PSLKNELYST LGPLCYQIPN VEEVAPISAS LHSEHHGAHQ TTQHSRDGLM 420
SPDGYTSPSP TIGKVSSPLT VDSILKTAAD SFPCTPSILR KRKRDKSTPT SDNFFTPNGK 480
GATANTPRSF KTASFLSLGP LDDGLLTSVR TSDASPPYQI RSKRMVAIKS VEKQLDFSAD 540
GLDTSGSEIL NSPCHNSQGA NSNRT*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT065322 | 0.0 | BT065322.1 Zea mays full-length cDNA clone ZM_BFb0099J01 mRNA, complete cds. |
