PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.C04939.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 312aa MW: 33380 Da PI: 9.8342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04939.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	32	77	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll +v+q+G+++W++I++ ++ gR++k+c++rw + Pahal.C04939.1 32 KGSWSPEEDTLLTSLVEQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 77 799***************************.*********985 PP
2	Myb_DNA-binding	54.6	2.5e-17	86	128	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ Pahal.C04939.1 86 PFTPREDALILAAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 128 89****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.939	27	82	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-31	30	125	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-16	31	80	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-17	32	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-25	33	85	IPR009057	Homeodomain-like
CDD	cd00167	6.06E-15	34	76	No hit	No description
SMART	SM00717	2.2E-15	83	131	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.255	83	133	IPR017930	Myb domain
CDD	cd00167	6.95E-13	86	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-23	86	131	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-15	86	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MERRPDEEAN AANDQPVVVA VATPPTRMMM KKGSWSPEED TLLTSLVEQH GPHRWSLISA 60 AIPGRSGKSC RLRWCNQLSP DVHHRPFTPR EDALILAAHA RYGNKWATIA RLLPGRTDNS 120 IKNHWNSNLR RCRRRAAAAA AAAASTSRGA AAAAGPQPPR RINLLQQQSA ENQPPPVADQ 180 QQCMMMGLAG PNPNNNSTDL LHGTAAAEPP TSLSLSLGPP LPPADPDQAA AADEVVAAAK 240 QALLPAEPPG GMMMKMKAAD LQPSPPLALP HHHQEGNAQL IAAVRQMVRE EVQRACSLMA 300 AAAWAKQGHH R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-37	29	131	1	103	C-Myb DNA-Binding Domain
1msf_C	3e-37	29	131	1	103	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243228	1e-157	AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807021.1	0.0	transcription factor MYB77-like
TrEMBL	A0A2S3HFW5	0.0	A0A2S3HFW5_9POAL; Uncharacterized protein
STRING	Pavir.Cb00156.1.p	2e-96	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13544	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-51	myb domain protein 70

Link Out ? help Back to Top
Phytozome	Pahal.C04939.1