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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C04873.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 130aa MW: 14584.8 Da PI: 10.6786 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C04873.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l +++q+Gg W + +r+ g++R++k+c++rw++yl
Pahal.C04873.1 14 RGPWSEEEDARLRSYIEQHGGAagGWMALPRKAGLRRCGKSCRLRWLNYL 63
89******************9899*************************7 PP
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2 | Myb_DNA-binding | 45 | 2.5e-14 | 70 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g++++eEd + +++ G++ W++Ia++++ gRt++ +k++w++
Pahal.C04873.1 70 GAFSPEEDHVICALHAAVGSR-WSLIAAHLPPGRTDNAVKNYWNT 113
89*******************.*********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 130 aa
Download sequence Send
to blast |
MGRSPCCDKA AVKRGPWSEE EDARLRSYIE QHGGAAGGWM ALPRKAGLRR CGKSCRLRWL 60 NYLRPGVRHG AFSPEEDHVI CALHAAVGSR WSLIAAHLPP GRTDNAVKNY WNTRLKKKML 120 LFAGRQPHDV
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
UniProt | Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}. |