PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 898aa MW: 99088 Da PI: 6.2315 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F +++ Pahal.C04744.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WND 219 99*****************************85545444..8************************************************..777 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Pahal.C04744.1 220 NNQLLLGIRRA 230 7778***9997 PP | |||||||
2 | Auxin_resp | 118 | 7.9e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k Pahal.C04744.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-47 | 117 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-42 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-21 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.506 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-7 | 761 | 849 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-7 | 763 | 839 | No hit | No description |
PROSITE profile | PS51745 | 23.182 | 764 | 848 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 898 aa Download sequence Send to blast |
MNLSPSKMAE PSPESDGEQR CLNSELWHAC AGPLVSLPMV GSRVVYFPQG HSEQVAASTN 60 KEVDAQIPNY PNLPPQLICQ LHNVTMHADV ETEEVYAQMT LQPLSPEEQK EPFLPIELGA 120 GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP 360 LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGSRGS QSLNFQGLGV 420 SPWLQPRIDY PLLGLKPDTY QQMAAAALEE IRGGDHLKQT SSLLAVQQTQ NLNGVLDPLY 480 GNPVLQQIQF QSQQSPLQAV QQGYGQNTGN SGFLQSQLQQ LHLQKQQEPP PQQQQQQTQQ 540 VLQQQSHQDM QQHLSSSCHD ITNVASSMSE AVSASQSQSS LLPGSSFYQQ NIFEGNSGPG 600 LHLHNSFHNF SSQEASNLLN LPRSGQLMAS EGWPSKRLAV EPLANLEAQS VQHKLEKVSH 660 QSNVSQNSGT LAPLSARDGS SAQALSTNVQ SHLLSSSFAI HDGMTTVRGD GVGSGTDAIT 720 IASLRYSDVN LLPENSLATS SCLGESGTFN SLNDVCGVNP SQGGTFVKVY KSGSLGRSLD 780 ITRFSSYYEL RSELERLFGL EGQLEDPVRS GWQLVFVDRE NDILLVGDDP WQEFVNSVWC 840 IKILSPQDVQ QMVRGRDDLL STHGATMLQG NACDDYSASH SMQHLTGSIA PVVPLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 14 | 359 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727963 | 0.0 | KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806869.1 | 0.0 | auxin response factor 25-like | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A2S3HFE4 | 0.0 | A0A2S3HFE4_9POAL; Auxin response factor | ||||
STRING | Pavir.Ca02838.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04744.1 |
Publications ? help Back to Top | |||
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