PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04574.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 549aa    MW: 63078.8 Da    PI: 7.461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04574.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.11.7e-105914238127
             NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk..kgel...........vglkktLvfykgrapkgek 118
                     ++ +v+PwdLp++         f +      ++++r++   t sgyWk++  +   ++k  +  +            g+++tL fy   +++g+k
  Pahal.C04574.1  59 GLAEVDPWDLPRR---------FAM------PKDQRTSSlRTYSGYWKEKEDEFIAIRKggG--EgssspssspcyDGVRRTLEFY---EHNGTK 133
                     5666666666621.........333......3344555545889****87665444444441..3466788899999*********...78999* PP

             NAM 119 tdWvmheyr 127
                     tdWvmhey 
  Pahal.C04574.1 134 TDWVMHEYY 142
                     *******95 PP
2NAM26.32e-0834640373127
             NAM  73 rknratksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127
                       +r+t++g W++  + dk +  +  +  l      glk+tL f+   + +g+ktdW+m ey+
  Pahal.C04574.1 346 SLSRKTHQGCWEEIKSnDKLIAIRigQ--LpvpqyAGLKRTLEFH---HDDGTKTDWIMLEYH 403
                     457899******887725555555440..356666*********9...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.2626162IPR003441NAC domain
SuperFamilySSF1019414.32E-1354162IPR003441NAC domain
PfamPF023651.1E-757141IPR003441NAC domain
PROSITE profilePS5080811.921236294IPR003656Zinc finger, BED-type
SMARTSM006149.2E-8240290IPR003656Zinc finger, BED-type
SuperFamilySSF576678.93E-5240286No hitNo description
PROSITE profilePS510057.929289427IPR003441NAC domain
PfamPF023656.5E-7321403IPR003441NAC domain
SuperFamilySSF1019414.84E-11331425IPR003441NAC domain
SMARTSM006143.2E-9492544IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.367492548IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEPDGAAATL RNINDAIEEV RRRSLRDRGW TIEEAIKDMR SGMWEWRRKA SRRLQANAGL  60
AEVDPWDLPR RFAMPKDQRT SSLRTYSGYW KEKEDEFIAI RKGGGEGSSS PSSSPCYDGV  120
RRTLEFYEHN GTKTDWVMHE YYHLAGNKIL QEDVVLRKVF NKKHTDRIHS CLESLDRVMK  180
AYHEALGKHG NVIRKVFLSV EMSLRSSLLL IDHLGDFEEA ESGCGEFPTA SAAPDGESDD  240
VWQHFTRINT KDPDVVYAAC HRCDRVLRAH SKNGTSHLRR HRKTKTCKCN SNPSSTTEDQ  300
ESLRELRANL DLYKQGKMEG RVVDSPDLNA SVDPWDLPTP RYCTSSLSRK THQGCWEEIK  360
SNDKLIAIRI GQLPVPQYAG LKRTLEFHHD DGTKTDWIML EYHQVDEYNT HDLLLEESMV  420
FRKVIQIFKD AVKELERMWN GDDDGEEERY IGEREEEVKA CMSTLLRDCL LGEAGQSDQS  480
RVGKRKRTGA PEGGSEVWLY FTKIYTMDPD RVYAVCHSCD RGYKGHSKNG TSHLKRHNMT  540
CSSKHRKV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.10.0uncharacterized protein LOC112885745
TrEMBLA0A2S3HEW30.0A0A2S3HEW3_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.25e-07NAC domain containing protein 1