PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03980.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 218aa    MW: 23161.5 Da    PI: 7.6375
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.45.8e-5570165297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyreleg+
  Pahal.C03980.1  70 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLHKYRELEGD 164
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  Pahal.C03980.1 165 R 165
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5066174IPR009072Histone-fold
SuperFamilySSF471138.54E-3972180IPR009072Histone-fold
PfamPF008088.1E-2775138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-17103121No hitNo description
PROSITE patternPS006850106122IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-17122140No hitNo description
PRINTSPR006153.1E-17141159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MALEGRERAA YSDSDSQQQA ASKNTRARER EGRAWPGIKR ASERTASMAD HHGQQPPGGG  60
GGGGHGEEIK EQDRLLPIAN VGRIMKQILP PNAKISKEAK ETMQECVSEF ISFVTGEASD  120
KCHKEKRKTV NGDDVCWAFG ALGFDDYVDP MRRYLHKYRE LEGDRAAAAA SSRGGGAPPD  180
HASTSGGPGA GPGPSGGSGH FMFGAMDRSD NSSSRPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4369160192Transcription factor HapC (Eurofung)
4g92_B2e-4369160192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-144HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814481.11e-124nuclear transcription factor Y subunit B-4-like
SwissprotO822486e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2S3HNB91e-122A0A2S3HNB9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DC451e-122A0A2T7DC45_9POAL; Uncharacterized protein
STRINGSi004874m9e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]