PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03643.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 384aa    MW: 42724.4 Da    PI: 8.0451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-123003721386
                     TT-EE--HHH.HTT---..--SEEEEEE.TTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltled.esg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++  +lp +f++ +g+ +++  ++tle+ +s+    sW   l+  k+ ++ ++++GW +F+ +n++++gD+++F+ ++
  Pahal.C03643.1 300 EH--CLPLSFCKVIGLREPC--MITLETsPSStstSSWLALLNPYKN-CSQLIGSGWARFCYENKIRVGDVCTFEIVE 372
                     44..79*****999*99777..6888874444677999999943333.3479***********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-589173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1089173IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.908137171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-13299381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-14300382IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-10302373IPR003340B3 DNA binding domain
CDDcd100172.39E-7303374No hitNo description
PROSITE profilePS5086310.433303383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MRIPDELAEE IGAGVAHVVG LPGSGKEVWP VEWLEFADAC GVEGGWFLDV RHCGHGLLTV  60
KAFDRSCCLR EIGAPPAVGA TSSSKGSLHK PQFISVLPPK SLEKMLIPAK FVQHYIPKEN  120
LNSSMTVVLR PPGKIGGWLQ FLASHGITDA NALLLRYEGN MMFAVNVFEP DGCQRGSRIK  180
DIRMQQDMEE QASSPCTQRC SRDREKKPKG PMTRLNEATL LMKSVYEIGP PSWIKKQINA  240
NTLKELESTT IILYTSDKFA NRNIKLYKST GANKLVCYGT YVYHILSAPD NVCHIYAFQE  300
HCLPLSFCKV IGLREPCMIT LETSPSSTST SSWLALLNPY KNCSQLIGSG WARFCYENKI  360
RVGDVCTFEI VETTQWDVII ERR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9VAH11e-110A0A0A9VAH1_ARUDO; Uncharacterized protein
STRINGPavir.Gb02557.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187