PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.C02822.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 189aa MW: 20682.9 Da PI: 9.4111

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02822.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	120	164	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qky Pahal.C02822.1 120 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 164 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0039	23	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.73E-11	23	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-6	25	73	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-4	26	73	No hit	No description
PROSITE profile	PS50090	7.05	26	73	IPR017877	Myb-like domain
PROSITE profile	PS51294	19.637	113	169	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-18	115	169	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-11	117	167	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.7E-17	117	168	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.5E-11	119	163	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-11	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	6.03E-11	120	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAFYYGVSGQ SSSAAAAWAA PPSSRPWSKA EDKVFEGALV TFPEHVPNRW TLVASRLPGR 60 TAQEAWDHYQ ALLTDVDLIE RGMVEAPDSW DEDAAAGGGR AGAGRGRGAG GGEERRRGVP 120 WTEEEHRLFL EGLEKYGRGD WRNISRWSVK TRTPTQVASH AQKYFIRQAS AGSRGDSKRK 180 SIHDITTP*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971405	1e-171	EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808699.1	1e-134	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-51	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2S3HBP1	1e-133	A0A2S3HBP1_9POAL; Uncharacterized protein
STRING	Si023363m	4e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2895	36	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	7e-42	MYB family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02822.1

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]